Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq16 89.7 4e-13 seq18 86.0 5e-12 >seq2 Length=32417782 Score = 104 bits (114), Expect = 2e-17 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| |||| || || || || || ||||| || Sbjct 15025486 TTTGATCATAGTTCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGAT 15025545 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| ||| ||| || ||||||||||||||| || ||| |||| || ||||| Sbjct 15025546 GTTGTAATCAGCCAATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTG 15025605 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| || | |||||| ||||| Sbjct 15025606 TTGATCAGGAGGAATGCCTTCCTTGTC 15025632 >seq16 Length=28979753 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | ||||| ||| | ||| || || ||||| ||||| ||||||||||| Sbjct 1159965 TTCCTCCACGAAGCCTCAGCACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAG 1160024 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| |||||||| ||| || || || | || |||||||| || || | Sbjct 1160025 CCAAAGTGCGGCCATCTTCCAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTG 1160084 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || || || || ||||||| || || | ||| | |||| |||| Sbjct 1160085 GGATTCCCTCCTTATCCTGAATTTTTGCCTTGACGTTATCAATGGTGTCGCTGCTTTCCA 1160144 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||| ||||| || ||||| || || || || || ||||| Sbjct 1160145 CCTCCAAGGTAATAGTTTTCCCAGTCAAGGTCTTAACGAAGATCTGCAT 1160193 >seq18 Length=25231592 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| |||| ||| || || || || || || || Sbjct 8340438 TTTGATCATAGTTCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGGAT 8340497 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | | ||| | ||||||||||||||| || ||| |||| | ||||| Sbjct 8340498 GTTGTAATCAGCAAGGGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTG 8340557 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| ||||| Sbjct 8340558 CTGATCAGGAGGAATGCCTTCCTTGTC 8340584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419576875401339