Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq17 165 7e-36 >seq17 Length=27373735 Score = 165 bits (182), Expect = 7e-36 Identities = 374/559 (67%), Gaps = 5/559 (1%) Strand=Plus/Plus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| || ||||| |||||||| |||||||||| | || | ||||||||||||||| Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC-Gaaa 13265 || || ||||| || || || || || | ||||||||| || ||| | | || || | Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGA 24448092 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC 13325 ||||||| || || || ||||| || |||| ||| ||| | | || | || Sbjct 24448093 AAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTC---TCCGAAC 24448149 Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 || |||||| | ||||| | || |||| || || | | || || | Sbjct 24448150 CATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGG 24448209 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 | | ||| ||| ||| || || || |||| |||||||| || | ||| | || | Sbjct 24448210 CATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGT 24448269 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 |||| || || |||||||| || || || |||||||| ||||||||| | |||||| | Sbjct 24448270 ACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAG 24448329 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 |||||||||||| ||| | | || | ||||| |||||| || ||| | Sbjct 24448330 CTACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGG 24448389 Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACC 13625 ||||||| || ||||| | || | ||||| | || || | | | || || Sbjct 24448390 CAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCC 24448449 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 ||| | | ||||| || | ||| |||||||| | |||||||| || || | || | Sbjct 24448450 AATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTT 24448509 Query 13686 TCTTATACATCATCCATAT 13704 |||| |||||| |||||| Sbjct 24448510 TCTTGTACATCTCCCATAT 24448528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430971795004638