Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17 105 6e-18 seq13 104 2e-17 seq12 96.9 3e-15 seq11 91.5 1e-13 seq4 86.0 5e-12 seq16 82.4 6e-11 >seq17 Length=27373735 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||||| || | ||| ||||| |||||||||||||||||| Sbjct 16112326 CCTCCCCGAAGCCTGAGCACTAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGCC 16112267 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || ||||||||||| ||| || | || | | ||||||||| || Sbjct 16112266 AAAGTCCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCTGGTGGG 16112207 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| |||||| ||| | | | ||||| ||| | |||| | Sbjct 16112206 ATACCTTCCTTGTCCTGAATTTTTGCCTTAACATTATCAATGGTGTCGCTGCTCTCCACC 16112147 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || ||||| || || | || ||||| |||||||||||| Sbjct 16112146 TCCAGGGTAATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATC 16112099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||||||| || ||||||| || ||||| ||| | | Sbjct 16111835 CTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAA 16111776 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| || || | || ||| || ||| ||||| |||| | Sbjct 16111775 GATGAGACGCTGCTGGTCTGGTGGGATACCTTCTTTATCCTGGATTTTGGCTTTGACGTT 16111716 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| ||| | ||| ||||| || |||||||| |||||||| || || Sbjct 16111715 GTCG--ATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTTTTTCCGGTGAGGGTCTTA 16111658 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 16111657 ACGAAGATCTGCATC 16111643 >seq13 Length=28119335 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| ||| |||||| || |||||||||||||| | | || || |||||| Sbjct 2662417 CACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGGC-CGTCCT 2662359 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | ||||||||||| || | | ||||||||| Sbjct 2662358 CCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCT 2662299 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || || || | |||||| ||| | ||||| || | Sbjct 2662298 GGATCTTGGCCTTGACATTGTCGATAGTGTCCGAAGACTCAACCTCTAGGGTTATCGTCT 2662239 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 | || || || |||||||| || |||||||| || Sbjct 2662238 TCCCCGTTAGGGTTTTCACGAAGATCTGCATGGT 2662205 >seq12 Length=31596830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||||||||| | | || || | ||||||||||| Sbjct 2046800 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGGC-CATCCTCCAGCTG 2046742 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || |||||| ||||||||||| || | | |||||| ||| || || Sbjct 2046741 CTTCCCTGCGAAAATTAGTCGCTGCTGATCGGGAGGAATTCCTTCCTTATCCTGGATCTT 2046682 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||||| ||| | ||||| || || || || Sbjct 2046681 GGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATCGTCTTCCCCGT 2046622 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 || |||||||| || |||||||| || Sbjct 2046621 TAGGGTTTTCACGAAGATCTGCATGGT 2046595 >seq11 Length=27369018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| |||||||| ||| |||||||||||| ||||| ||||| || || || | |||| Sbjct 5723205 CACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGC-AAGGGTGCGGCCATCCT 5723147 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | | || | | |||||| || || | || ||| |||||| Sbjct 5723146 CTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCT 5723087 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | ||||| || | | ||| ||| | || || || | Sbjct 5723086 GGATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCACCTCCAAAGTGATTGTCT 5723027 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||||||||| ||||| ||||||||| Sbjct 5723026 TGCCGGTGAGAGTTTTTACAAAGATCTGCATC 5722995 >seq4 Length=28735499 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| ||| || || || ||||| || || || ||| || | |||| Sbjct 24493446 CACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGC-AAGTGTGCGGCCATCCT 24493504 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | | || || | ||||||||| || | | |||||||||| Sbjct 24493505 CAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCT 24493564 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||||| | | || || || | | ||| ||| | || ||||| | Sbjct 24493565 GAATTTTGGCCTTGACATTGTCAATCGTGTCCGAACTCTCTACCTCCAAAGTAATGGTCT 24493624 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| ||||||||||||||||| Sbjct 24493625 TCCCTGTAAGAGTCTTCACAAAAATCTGCAT 24493655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGT 48593 |||||| || || ||||||||||| || ||| || ||||| |||||||| || || Sbjct 24493008 CTCCTTCTGGATATTGTAATCAGC-AAGGGTCCTTCCATCCTCAAGCTGCTTTCCAGCGA 24493066 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| || | ||||||||| || | | |||||||||| ||||| ||| | Sbjct 24493067 AAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCCTTCACGT 24493126 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | | ||| ||| | || ||||| || || || ||||| |||| Sbjct 24493127 TGTCAATAGTATCCGAACTCTCTACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTCA 24493186 Query 48714 CAAAAATCTGCAT 48726 ||||||||||||| Sbjct 24493187 CAAAAATCTGCAT 24493199 >seq16 Length=28979753 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | | ||| | ||||| || ||| |||||||| || |||||||| Sbjct 1160194 ACCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGC 1160253 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| || |||||||| ||| || | || | | ||||| || || Sbjct 1160254 CAAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGG 1160313 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| || ||||| | ||||| ||| | |||| Sbjct 1160314 AATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCAC 1160373 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| | |||||||| || |||||||| Sbjct 1160374 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 1160421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240834456019