Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11 118 6e-22 seq2 118 6e-22 seq8 116 2e-21 seq6 113 2e-20 seq1 113 2e-20 seq18 109 3e-19 seq10 109 3e-19 seq7 109 3e-19 seq14 107 1e-18 seq12 107 1e-18 seq5 105 3e-18 seq17 104 1e-17 seq16 104 1e-17 seq15 104 1e-17 >seq11 Length=27369018 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2734716 AATGAAAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 2734774 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| ||||||||||||||| |||||| Sbjct 2734775 GACGCTCTAACCAACTGAGCTAATAGGCCGT 2734805 >seq2 Length=32417782 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 10058107 AAAATGAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 10058166 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 10058167 TCTAACCAACTGAGCTAATAGGCC 10058190 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 6250541 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 6250600 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 6250601 CAACTGAGCTAATAGGCCG 6250619 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10119681 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10119740 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 10119741 TGAGCTAATGGGCC 10119754 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7919406 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7919347 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7919346 TGAGCTAATAGGCC 7919333 >seq8 Length=34000172 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 24963276 AAAAAAGCTAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 24963217 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 24963216 GCTCTAACCAACTGAGCTAATAGGCC 24963191 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 24955669 AAAAAAGCTGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 24955610 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 24955609 GCTCTAACCAACTGAGCTAATAGGCC 24955584 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1986377 AAAATGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1986436 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 1986437 CAGCTGAGCTAATAGGCC 1986454 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 24968569 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 24968510 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 24968509 GCTGAGCTAATAGGCC 24968494 >seq6 Length=27939960 Score = 113 bits (124), Expect = 2e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 18717078 AAAAAATGAA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 18717020 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 18717019 GCTCTAACCAACTGAGCTAATAGGCC 18716994 >seq1 Length=34959721 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 3675336 AAAATAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 3675395 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 3675396 TCTAACCAACTGAGCTAATAGGCC 3675419 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 25884742 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 25884683 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 25884682 CAACTGAGCTAATAGGCC 25884665 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22534004 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22534063 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 22534064 TGAGCTAATAGGCCG 22534078 >seq18 Length=25231592 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 23820999 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 23821058 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 23821059 AACTGAGCTAATAGGCC 23821075 >seq10 Length=26335333 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 5277538 AAAATTCAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 5277595 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||| ||||| Sbjct 5277596 CTCTAACCAACTGAGCTAATAGGCCG 5277621 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 5283928 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 5283987 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 5283988 ACTGAGCTAATAGGCC 5284003 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 25484521 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 25484462 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 25484461 CTGAGCTAATAGGCC 25484447 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 5280167 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5280226 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 5280227 TGAGCTAATAGGCCG 5280241 >seq7 Length=27069033 Score = 109 bits (120), Expect = 3e-19 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| || || |||||| || ||||||||| | | |||||||| ||||||||| Sbjct 787462 AAAAATAAAAAAAAGTAAAAATAAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCG 787519 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 787520 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 787560 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22009118 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22009177 Query 11516 TGAGCTAATGGGCCGTCG 11533 ||||||||| |||| ||| Sbjct 22009178 TGAGCTAATAGGCCATCG 22009195 Score = 107 bits (118), Expect = 1e-18 Identities = 89/107 (83%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 11425 AGGGAAATAT-AGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGA 11482 ||| ||||| |||| || || || | || | ||||||||| | | |||||||| ||| Sbjct 22009604 AGGAAAATAAGAGAAAGAAAAAGAATTAAACAATGGCCCATGCAGGTCTCGAACCTGCGA 22009663 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 22009664 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 22009710 >seq14 Length=24855542 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 7848894 AAAAAGAGAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 7848953 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 7848954 GCTCTAACCAACTGAGCTAATAGGCC 7848979 >seq12 Length=31596830 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 18662651 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 18662710 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 18662711 CAACTGAGCTAATAGGCC 18662728 >seq5 Length=28438989 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 10312201 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10312142 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 10312141 CTGAGCTAATAGGCC 10312127 >seq17 Length=27373735 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 || || ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 19782366 AACATGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 19782307 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||| ||||||||||| |||| Sbjct 19782306 TCTAACCCACTGAGCTAATAGGCC 19782283 >seq16 Length=28979753 Score = 104 bits (114), Expect = 1e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11441 AATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| || ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 5852173 AATAAAATAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 5852232 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| |||| ||||||||| ||||| Sbjct 5852233 CGACGCTCTAACCAGCTGAGCTAAAAGGCCG 5852263 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| || |||||||||||||||||||| ||||| || Sbjct 5861661 AAAATGGCCCATGCAGGTCTCGAACCTGCGGCCTTCGCGTTATTAGCACGATGCTCTAAC 5861720 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 5861721 CAACTGAGCTAATAGGCCG 5861739 >seq15 Length=26192760 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 11412004 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11412063 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 11412064 TGAGCTAATAGGCC 11412077 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484765600444