Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10 178 2e-40 seq4 170 3e-38 seq7 156 7e-34 seq14 147 3e-31 seq11 140 5e-29 seq6 125 1e-24 seq2 122 1e-23 seq1 93.3 7e-15 >seq10 Length=26335333 Score = 178 bits (196), Expect = 2e-40 Identities = 201/267 (75%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | || |||||||||||||| ||||||||||| |||||||| || Sbjct 3434773 GCCAAGCGTCACCGCAAGGTC-CTTCGAGATAACATTCAAGGAATCACAAAGCCAGCCAT 3434831 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||| | ||||| || || ||| || ||| ||| |||||||||||| Sbjct 3434832 TCGTCGATTGGCTCGCAGAGGTGGTGTGAAACGTATCAGTGGTTTGATCTATGAAGAGAC 3434891 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||||||||| ||| || ||| |||||| | ||| || || Sbjct 3434892 CCGTGGAGTACTGAAGATCTTCCTTGAGAATGTGATCAGAGATGCTGTGACCTACACAGA 3434951 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| || |||||||| | || ||||| ||||| | ||||| Sbjct 3434952 ACACGCCCGGCGCAAGACTGTTACAGCCATGGATGTGGTGTATGCCTTGAAGAGACAAGG 3435011 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||||| ||||| |||| Sbjct 3435012 CAGGACCCTTTATGGATTTGGTGGTTA 3435038 >seq4 Length=28735499 Score = 170 bits (188), Expect = 3e-38 Identities = 192/257 (75%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||||||||| || |||||||||||||| ||||| ||||||||||||||| | || Sbjct 3080461 TCTCCGAGATAACATTCAGGGAATCACCAAGCCTGCTATTCGTCGTCTGGCTCGTAGAGG 3080520 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| ||||||| |||| ||||| || ||||||||||| Sbjct 3080521 TGGTGTGAAGAGGATCAGTGGGTTGATCTATGAGGAGACTCGTGGAGTATTGAAGATCTT 3080580 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || |||| ||||||| | ||| || |||||||| | | | ||||| || Sbjct 3080581 TTTGGAGAATGTGATCCGTGATGCTGTGACCTACACTGAGCACGCGAGAAGGAAGACGGT 3080640 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||||||||| | || || | | | || || || || Sbjct 3080641 TACTGCTATGGATGTGGTTTATGCATTGAAGAGGCAGGGAAGGACTCTATACGGGTTCGG 3080700 Query 16693 AAGTTAATCTTCTAATC 16709 ||||| |||| |||| Sbjct 3080701 TGGTTAAACTTCAAATC 3080717 Score = 129 bits (142), Expect = 9e-26 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||||||||| ||||| |||||| |||||||| | || || | Sbjct 3737433 GAGATAACATTCAGGGCATCACCAAGCCTGCTATTCGTCGTTTGGCTCGTAGAGGCGGTG 3737374 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | ||| ||| ||||||| |||| ||||| || | ||||||||| | Sbjct 3737373 TGAAGAGGATTAGTGGCTTGATCTATGAGGAGACTCGTGGAGTCCTCAAGATCTTCTTGG 3737314 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | |||||| | ||||| |||||||| | | |||||||| ||| Sbjct 3737313 AGAACGTGATTCGCGATGCTGTGACTTATACTGAGCACGCCAGGAGAAAGACTGTTACCG 3737254 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | ||||| | || ||||| | || | || || | | | ||||||||||| ||| Sbjct 3737253 CGATGGACGTGGTTTATGCCCTCAAGAGGCAGGGAAGGACTTTGTATGGTTTTGGGGGTT 3737194 Query 16698 A 16698 | Sbjct 3737193 A 3737193 >seq7 Length=27069033 Score = 156 bits (172), Expect = 7e-34 Identities = 197/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| | || ||||||||||| ||||||||||||||||||||||| || Sbjct 24276716 GCCAAACGACATCGCAAGGTC-CTTCGAGATAATATCCAAGGAATCACCAAGCCAGCAAT 24276774 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| | |||||||| |||||| || ||| || |||||||||| | Sbjct 24276775 TCGGCGTTTGGCTCGCAGGGGTGGAGTGAAGCGTATCAGTGGTCTGATCTATGAAGAAAC 24276834 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||||| ||||| | | || || || || | ||| || || Sbjct 24276835 CCGTGGAGTACTCAAGATTTTCCTTGAAAATGTGATTAGAGACGCAGTGACCTACACAGA 24276894 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| || |||||||| | || ||||||||||| | || || Sbjct 24276895 ACACGCTCGCCGGAAGACTGTTACAGCCATGGATGTGGTGTATGCATTGAAGAGGCAGGG 24276954 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||||| ||||| ||||| Sbjct 24276955 CAGAACCCTTTATGGGTTTGGTGGTTAA 24276982 Score = 86.0 bits (94), Expect = 1e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| |||| | ||||| |||||||||||||| ||||| |||||||| || Sbjct 23586898 GCCAAACGTCACCGCAAAGTCCTTCGCGATAACATCCAAGGCATCACAAAGCCAGCAATT 23586839 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTG 16537 || || ||||||| | ||||| || |||||| || ||||||| Sbjct 23586838 CGGCGATTGGCTCGCAGAGGTGGTGTAAAGCGTATCAGTGGATTG 23586794 >seq14 Length=24855542 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || ||||||||||| || ||||| || ||||| | ||||| Sbjct 7066293 TCTACGGGATAACATCCAGGGCATCACCAAGCCTGCGATCCGCCGGCTGGCCAGGCGTGG 7066352 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||||||||| || || | ||||||| |||| | | | || | |||||||| Sbjct 7066353 CGGAGTCAAGCGTATCAGCGGTCTCATCTATGAGGAGACTAGAGGCGTCCTCAAGATCTT 7066412 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | |||||| | ||| |||||||| ||| |||||||| || Sbjct 7066413 CCTGGAGAACGTCATTCGTGATGCGGTTACCTACACCGAGCATGCTCGCCGTAAGACCGT 7066472 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| |||||| | || || | | | ||||||||||| Sbjct 7066473 TACTGCTATGGATGTTGTGTATGCCTTGAAAAGGCAGGGTAGGACTCTGTATGGTTTTGG 7066532 Query 16693 AAGTTA 16698 |||| Sbjct 7066533 TGGTTA 7066538 >seq11 Length=27369018 Score = 140 bits (154), Expect = 5e-29 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| |||||||| ||||| || || |||||||||||||| | || Sbjct 24940471 TCTTCGCGATAACATCCAGGGAATCACTAAGCCTGCAATTCGTCGTCTGGCTCGAAGAGG 24940412 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| ||| | || ||||||| |||| || ||||| || || Sbjct 24940411 TGGCGTCAAGAGGATCAGTGGGTTGATTTACGAAGAGACCCGTGGAGTCTTGAAAATTTT 24940352 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | || |||| |||||| | || || |||||||| | | | ||||| || Sbjct 24940351 CTTGGAAAATGTGATCCGTGATGCCGTGACTTACACTGAGCACGCAAGAAGAAAGACGGT 24940292 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||||||| | || ||||||||||| Sbjct 24940291 GACTGCCATGGATGTGGTGTATGCATTGAA 24940262 >seq6 Length=27939960 Score = 125 bits (138), Expect = 1e-24 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| ||||| || ||||||||||| ||||| || | |||| | ||||| Sbjct 19574620 CTCCGGGATAATATCCAGGGCATCACCAAGCCTGCTATTCGAAGGTTGGCCAGGCGTGGC 19574561 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| || || | |||| || |||| | | | || | ||||||||| Sbjct 19574560 GGTGTAAAACGTATCAGCGGTCTCATCTACGAGGAGACTAGAGGCGTCCTCAAGATCTTC 19574501 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | |||||| || || || |||||||||||| ||||||||||| Sbjct 19574500 CTCGAGAACGTCATTCGTGATGCCGTTACA-TACACCGAGCACGCTCGCCGTAAGACTGT 19574442 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| |||||||||| ||||| | || ||| | | |||| || || || Sbjct 19574441 TACTGCTATGGATGTCGTCTATGCTTTGAAGAGGCAGGGCAGGACACTTTACGGGTTCGG 19574382 Query 16693 AAGTTA 16698 |||| Sbjct 19574381 TGGTTA 19574376 >seq2 Length=32417782 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || || || || || || || ||||| ||||||||| | || Sbjct 2301648 TCTGCGGGATAACATCCAGGGGATTACGAAACCGGCAATTCGTCGGCTGGCTCGTAGAGG 2301707 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| || ||| | | |||||||||| | | ||| | |||||||| Sbjct 2301708 AGGCGTGAAGCGTATCAGTGGTCTCATTTATGAAGAGACCAGAGGGGTTCTCAAGATCTT 2301767 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | || || | ||||||| | || || || ||||| | | | |||||||| Sbjct 2301768 CCTTGAAAATGTGATTCGTGATGCTGTTACTTACACTGAACACGCAAGAAGAAAGACTGT 2301827 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | |||||||| | || | || || || | | | ||||| ||||| Sbjct 2301828 AACCGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGTCGGACGCTCTATGGCTTTGG 2301887 >seq1 Length=34959721 Score = 93.3 bits (102), Expect = 7e-15 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||| ||||| || || ||||| || || ||| | || || || Sbjct 19389986 GATAACATTCAGGGAATCACGAAGCCGGCAATTCGTCGGCTAGCCCGTAGAGGAGGCGTG 19389927 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | | ||||| || | | | || | ||||||||||| | Sbjct 19389926 AAGCGTATCAGTGGTCTCATTTATGAGGAAACCAGAGGCGTCCTCAAGATCTTCCTTGAA 19389867 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| || || || ||||| ||| | | ||||| || || || Sbjct 19389866 AATGTGATACGTGATGCTGTCACTTACACTGAGCATGCTCGAAGAAAGACCGTAACTGCC 19389807 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||| | || || || | | || || ||||| ||| | Sbjct 19389806 ATGGATGTTGTTTATGCCCTGAAGAGGCAGGGTCGAACCCTCTACGGCTTTGGTGGTTGA 19389747 Query 16700 T 16700 | Sbjct 19389746 T 19389746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073354014167