Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1998 295 8e-75 seq287 214 2e-50 seq151 203 4e-47 seq14 176 6e-39 seq560 93.3 5e-14 >seq1998 Length=1172 Score = 295 bits (326), Expect = 8e-75 Identities = 328/435 (75%), Gaps = 2/435 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || ||||| || || | || |||||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| |||||| | | | || || |||| |||||| | |||||||| ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| |||||| | || ||||| || Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 || || |||||||| |||| ||| || || || || | || || || || || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 |||||||| || ||| ||||||| ||| |||| ||||| ||||||||| | ||| | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | |||||| | | ||||| | |||||||||||| ||||||||||| || ||| Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 ||||||||||||||||||||| ||| || || ||||| |||||||| ||||||||||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 135793 TGTTTTCCTGGTCTA 135807 ||||||| || |||| Sbjct 16 TGTTTTCTTGATCTA 2 >seq287 Length=58314 Score = 214 bits (236), Expect = 2e-50 Identities = 553/831 (67%), Gaps = 44/831 (5%) Strand=Plus/Minus Query 135370 ACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAAC 135429 ||| ||||| | ||| | |||| ||| || ||| | |||| | |||||||| | Sbjct 18437 ACATTTCTGTAACTGGATAACCAACACTGAAAACGTCTTCTACATTTTATGGTTTGGTAT 18378 Query 135430 GCTGATGATTCCTACTCTT-----CTCGCAGCTGCTATCTGCTTTATTGTTGCTTTCATC 135484 |||||| |||||| | | | || || |||| | ||||| |||| ||||| Sbjct 18377 TTTGATGACCCCTACTTTATAGACCGCACAACTTCTATAT---TTATTATTGCATTCATT 18321 Query 135485 GCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTAC 135544 ||| || || | ||||| | || || || ||||||||| | | |||||| | || Sbjct 18320 AATGCTCCCCCGATAAATATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTAT 18261 Query 135545 GGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAAC----GCCATCGGCCTT 135598 | |||||| || || ||| || | |||| ||| || || | || || || Sbjct 18260 GCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCTTCTGCAGCTATAGGTTGG 18201 Query 135599 CACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCT 135658 || || || | |||| || ||| ||||||| ||| |||| |||| | |||| Sbjct 18200 CATTTTTACTCAATCTAGG--------TCTATTGATGAATGGTTATACAATGACGATCCT 18149 Query 135659 TATCAACTAGTGGTC---TTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAG 135715 || ||||| | || ||| || |||| |||| | |||||| ||| | ||| Sbjct 18148 TAAGAACTAATTGTTCAATTCTTTTTACTTA---GTGTAGCTTGTTACATAGGTGGTGAG 18092 Query 135716 TGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCT 135775 ||| |||| || ||||| ||||| | |||||||||| ||| || || ||||| | | Sbjct 18091 TGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGT 18032 Query 135776 GTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGAT 135835 ||||| || ||| | ||||||| || |||| || |||| | || | ||| | || Sbjct 18031 GTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTAT 17972 Query 135836 GGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACAC 135895 ||||||| || || | | || | ||| |||| | | |||| ||| || | || ||| Sbjct 17971 AGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCAC 17912 Query 135896 AACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTG 135955 ||||| || || || || || ||||| | || || | | | |||| | Sbjct 17911 AACATCCTTATACACCCATTTCACATATCAGGCGTAATTACAC-CAAC-----TTCT-TA 17859 Query 135956 TTCTCTGCTATGCATGGATCTCTTG-TCACCTCTAGTCTTGTACGTGAGACGAC-TGAGG 136013 ||| |||||||||| | || |||| | ||||||||| | || || || || | | Sbjct 17858 TTCAGTGCTATGCATCGTTC-CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAA 17800 Query 136014 TAGAATCCCAGAACTATGGTTACAAGTTCGGTCAA-GAAGAAGAGACTTACAACATTGTT 136072 || ||||| || | |||||| ||| || || || ||| | ||||| || || | Sbjct 17799 TA-AATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATA 17741 Query 136073 GCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGT 136132 |||||||||||||| || || || ||| |||||||||| ||||||||||||| | Sbjct 17740 GCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATATAT----TTCAACAACTCTCAT 17685 Query 136133 TCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCT 136183 || |||| |||||||| | |||||||||| | || ||||| | |||| || Sbjct 17684 TCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACT 17634 Score = 147 bits (162), Expect = 3e-30 Identities = 315/468 (67%), Gaps = 16/468 (3%) Strand=Plus/Minus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| ||||||||||| |||| || || | ||||| | || || ||||||||| Sbjct 44880 TTTATTATTGCTTTCATCACTGCTCCCCCAATAAATATTAATGGTATTTTTGAACCTGTT 44821 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTA--GCA 135584 | | |||||| | || | |||||| || || ||| || | |||| ||| || ||| Sbjct 44820 TTTAGATCTCTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCA 44761 Query 135585 ACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTAT 135644 || || || || || | | || |||| ||| ||||||| ||| ||| Sbjct 44760 --GCTATAGGTTGGCATTTTAACTCAATTTGGG--------TCTATTGATGAATGGTTAT 44711 Query 135645 ATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCG--GTGTCTTCTCTTA 135702 | || | | ||||| ||||| | || ||||| ||| | |||| | ||| Sbjct 44710 ACAAAGACAATGCTTATGAACTAATTGTTCAACACTT--TTAACTTAGTGTAGCTTGTTA 44653 Query 135703 CATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGC 135762 ||||||||| ||||||||||| || ||||| ||||| | |||||||||| ||| || Sbjct 44652 CATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGC 44593 Query 135763 TTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGG 135822 || ||||| | |||||| |||||| | |||||| || |||| || |||| | || Sbjct 44592 ATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGG 44533 Query 135823 TTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTT 135882 || | || | ||||| || || | | | | ||| |||| || |||| || Sbjct 44532 AAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATT 44473 Query 135883 CCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGT 135930 | |||| || |||||||| || ||||| || || ||||| || || || Sbjct 44472 CTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGT 44425 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 136050 AAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAAT 136109 || || | ||||| || ||||| |||||||||||||| || || || ||| ||| |||| Sbjct 44360 AAAAAAAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGAACTTTCAAT 44301 Query 136110 ATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCG 136169 || ||||||||||||| ||| |||| |||||||| | |||||||||| || | Sbjct 44300 ATAT----TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTACGGTAG 44245 Query 136170 GTATCTGGTTTGCT 136183 ||| | |||| || Sbjct 44244 ATATTTAGTTTACT 44231 >seq151 Length=113734 Score = 203 bits (224), Expect = 4e-47 Identities = 552/831 (66%), Gaps = 43/831 (5%) Strand=Plus/Minus Query 135370 ACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCT-CTATGTGGGTTGGTTTGGAA 135428 ||| ||||| | ||| | |||| ||| | |||||||| ||| | | |||||||| | Sbjct 5189 ACATTTCTGTAATTGGATAACCAACACTAA-AACCGCCTTCTACATTGTATGGTTTGGTA 5131 Query 135429 CGCTGATGATTCCTACTCTTCT-----CGCAGCTGCTATCTGCTTTATTGTTGCTTTCAT 135483 ||||||| |||||| | | | || || |||| | ||||| |||| ||||| Sbjct 5130 TTTTGATGATCCCTACTTTATTGACCACACAACTTCTATAT---TTATTATTGCATTCAT 5074 Query 135484 CGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTA 135543 ||| || || | | ||| | || || || ||||||||| | | |||||| | || Sbjct 5073 TAATGCTCCCCCGATAAACATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTA 5014 Query 135544 CGGAAATAACATCATCTCTGGTGCTGTTATCC---CTTCTAGCAAC----GCCATCGGCC 135596 | |||||| || || ||| || | |||| | ||||| || | || || || Sbjct 5013 TGCAAATAATATTATTTCTAGTATTATTATTCTTACTTCT-GCTTCTGCAGCTATAGGTT 4955 Query 135597 TTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTC 135656 || || || | |||||| ||| ||||||| |||||||| |||| || Sbjct 4954 GGCATTTTTACTCAATCTGGC--------TCTGTTGATGAATGGCTATACAATGACTATC 4903 Query 135657 CTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGT 135716 |||| ||||| | || |||| | | |||| | |||||| ||| |||| Sbjct 4902 CTTAAGAACTAATTGTTCAATACTTTTTACTTAGTGTAGCTTGTTACATAGGTGATGAGT 4843 Query 135717 GGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTG 135776 || |||| || ||| | ||||| | |||||||||| ||| || || ||||| | || Sbjct 4842 GGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTG 4783 Query 135777 TTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATG 135836 |||| |||| | | ||||||| || |||| || |||| | || ||| | || Sbjct 4782 TTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATA 4723 Query 135837 GTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACA 135896 ||||||| || || | || ||| | ||| |||| ||| |||| ||| || | | |||| Sbjct 4722 GTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACA 4663 Query 135897 ACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGT 135956 |||| || | || || || ||||| || || || | | | |||| | | Sbjct 4662 ACATCCTTGTACACCCATTTCACATATTAGGCGTAATTACAA-CAAC-----TTCT-TAT 4610 Query 135957 TCTCTGCTATGCATGGATCTCTTG-TCACCTCTAGTCTTGTACGTGAGACGAC-TGAGGT 136014 || |||||||||| | || |||| | ||||||||| | || || || || | | | Sbjct 4609 TCAATGCTATGCATCGTTC-CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAAT 4551 Query 136015 AGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAG--AAGAGACTTACAACATTGTT 136072 | ||||| || | |||||| ||| || || || || | ||||| || || | Sbjct 4550 A-AATCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATA 4492 Query 136073 GCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGT 136132 |||||||||||||| || || || ||| |||||||| || ||||||||||||| | Sbjct 4491 GCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT----GTATTTCAACAACTCTCAT 4436 Query 136133 TCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCT 136183 || |||| |||||||| | |||||||||| | || ||||| | |||| || Sbjct 4435 TCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACT 4385 >seq14 Length=24855542 Score = 176 bits (194), Expect = 6e-39 Identities = 190/249 (76%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 138534 ACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTT 138593 ||||||| |||||||| ||||||||||| || |||||||| | | || ||||||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 138594 GGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATG 138653 || |||||||| |||| | |||| | || ||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 138654 GGTCTCTGGACTAGTAGTATTGGTATTATT-GGTCTTGCTCTTAACCTACGAGCGTATGA 138712 ||| | |||| || | | || |||| | ||||| |||| || |||| || ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 138713 TTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAA 138772 ||||| || || |||| ||||||||||||||||||||||| ||||| ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 138773 GAACATTCT 138781 || ||||| Sbjct 951966 AAATATTCT 951958 >seq560 Length=20368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 135773 CCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGT 135832 |||||||| |||||||||||| ||||| || |||| || |||| || || || | Sbjct 20253 CCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCT 20312 Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGC 135888 ||||||||||| || || || ||||| ||||| |||| ||| |||| |||||||| Sbjct 20313 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627952151657600