Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1998 199 1e-46 seq287 116 1e-21 seq560 93.3 1e-14 >seq1998 Length=1172 Score = 199 bits (220), Expect = 1e-46 Identities = 304/429 (71%), Gaps = 3/429 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| |||| || || || || || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 316 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 315 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 256 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||| ||||| || || Sbjct 255 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 196 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| || | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 195 TGGGAAGC-GGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | |||| ||| ||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 19709 TGTGTTTCT 19717 ||| ||||| Sbjct 16 TGT-TTTCT 9 >seq287 Length=58314 Score = 116 bits (128), Expect = 1e-21 Identities = 487/755 (65%), Gaps = 44/755 (6%) Strand=Plus/Minus Query 19414 TAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTA 19473 || |||| |||| || ||||| || |||| | || || | || | ||| ||||||| Sbjct 18307 TAAATATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTATGCAAATAATATTA 18248 Query 19474 TTTCTGG-AGCAGTAGTTCCAA-----GCTCCAATGCA---ATAGGACTGCACTTTTATC 19524 ||||| | | | || |||| | ||| | |||| ||||| ||| ||||| Sbjct 18247 TTTCTAGTATTATTA-TTCCTACTTCTGCTTC--TGCAGCTATAGGTTGGCATTTTTACT 18191 Query 19525 CGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTG 19584 | |||| || || | ||||| ||||||||||| | || ||| || |||| Sbjct 18190 CAATCTAGGT--------CTATTGATGAATGGTTATACAATGACGATCCTTAAGAACTAA 18139 Query 19585 TTGTCTTCCA--CTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATC 19642 ||| ||| | ||| ||| | | ||||| ||| ||| | ||||| |||| Sbjct 18138 TTG--TTCAATTCTTTTTACTTAGTGTAGCTTGTTACATAGGTGGTGAGTGGCAACTTAA 18081 Query 19643 TTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGC 19702 || || | | ||| | || ||||| || || |||||| |||| | | || | | Sbjct 18080 TTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTAC 18021 Query 19703 TCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGA-GTTTTAGTGATGGTATGCCT 19760 | || ||| ||||| | | || ||| || ||| ||||| ||||| | || |||||||| Sbjct 18020 TATTATTGT-TTTCTTGATCTATCCAATT-GGCTAGGGATGTTTTTCTTATAGTATGCCT 17963 Query 19761 CTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTT 19820 || || | || || || ||| ||||||| | | |||||| | | || ||||| |||||| Sbjct 17962 CTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTT 17903 Query 19821 ATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT-ATTCGGTGGATCTCTT-TTCTCTG 19878 || || || || |||| | | ||||| ||| | |||| ||| || Sbjct 17902 ATACACCCATTTCACA---------TATCAGGCGTAATTACACCAACTTCTTATTCAGTG 17852 Query 19879 CTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGC 19938 ||||||| | ||| | || || | || |||||||| || | || ||| Sbjct 17851 CTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCG 17792 Query 19939 AGAACTATGGCTATAAGTTC-GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACAC 19997 || | | || | ||| | |||| ||| | || |||||||| | ||||| || Sbjct 17791 CTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCAT 17732 Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || || ||||| |||||| || ||||| | |||||| || |||| |||||||||| Sbjct 17731 GGTTATTTTGGCCGATTGAACTTCCAATA----TATTTCAACAACTCTCATTCTTTACAT 17676 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 || || || | | ||| || | || || || | | |||| | | || ||| | Sbjct 17675 TTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTAGATATTAGCATT 17616 Query 20118 ATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 ||| |||| | ||| |||| |||| | || ||||| Sbjct 17615 ATGTCTTTTAGCCTAAATGATTTTGATTTCAACCA 17581 Score = 96.9 bits (106), Expect = 1e-15 Identities = 298/457 (65%), Gaps = 12/457 (3%) Strand=Plus/Minus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| | || || ||| | || || || || |||| |||| || ||| || ||| Sbjct 44880 TTTATTATTGCTTTCATCACTGCTCCCCCAATAAATATTAATGGTATTTTTGAACCTGTT 44821 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGG-AGCAGTAGTTCCAAGCTCCAA 19501 | | || || | || | ||| |||||||||||| | | | || |||| | || Sbjct 44820 TTTAGATCTCTACTTTATGCAAATAATATTATTTCTAGTATTATTA-TTCCTACTTCTGC 44762 Query 19502 TGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATA 19561 || ||||| ||| ||| | | || |||| || | ||||| |||||||| Sbjct 44761 AGCTATAGGTTGGCATTTTAACTCAATTTGGGT--------CTATTGATGAATGGTTATA 44710 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||| | | | | ||| |||| |||| ||||| | | | | ||||| ||| Sbjct 44709 CAAAGACAATGCTTATGAACTAATTGTTCAACACTTTTAACTTAGTGTAGCTTGTTACAT 44650 Query 19622 TGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATA 19681 ||| | |||||||||| || || || | ||| | || ||||| || || ||||| Sbjct 44649 GGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCATA 44590 Query 19682 TACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGA 19740 | |||| | | || | ||| || || ||||| | | || ||| |||| | || | Sbjct 44589 TTCAGCTCATGTTGCAACTGCTATTATGGT-TTTCTTGATCTATCCAATTGGTTAGGGAA 44531 Query 19741 GTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCC 19800 | ||| | || | ||||| || || | || | || ||| |||||||| | |||||| Sbjct 44530 GCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTCT 44471 Query 19801 AAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837 | || || ||||| ||||||||||| || || ||||| Sbjct 44470 AGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Score = 93.3 bits (102), Expect = 1e-14 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 19974 ACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCT 20033 || ||||||||||| ||||| || || || ||||| |||||| |||||||| | | Sbjct 44352 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGAACTTTCAATA----TAT 44297 Query 20034 TTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGG 20093 ||||| || |||| |||||||||||| || || | | ||| || ||| | || | | Sbjct 44296 TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTACGGTAGATATTTAG 44237 Query 20094 CTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 |||| | | || ||| |||| |||| ||||| |||| |||||| || ||||| Sbjct 44236 TTTACTATTTTAGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 44178 >seq560 Length=20368 Score = 93.3 bits (102), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGT 19754 |||| ||| |||| | ||||| | | || ||| |||| || || || ||| ||||||| Sbjct 20260 CAGCTGCTACTGCTCT-TTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 20318 Query 19755 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGC 19804 |||||||| || |||||||||||||| ||||||||| | |||||||| || Sbjct 20319 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144438136922364