Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1998 187 4e-42 seq287 87.8 3e-12 >seq1998 Length=1172 Score = 187 bits (206), Expect = 4e-42 Identities = 273/386 (71%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 395 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 336 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| | Sbjct 335 TCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 276 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| || || |||||||| || |||| |||| || || | Sbjct 275 CTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAG 216 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || || || || |||||||| ||| || ||||||| ||| | |||||||| | Sbjct 215 GTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCG 156 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| || | | | | |||||| | | || | | |||||||| | Sbjct 155 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 96 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| | Sbjct 95 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 36 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTC 211995 |||| |||| ||| ||||| ||| Sbjct 35 CTGTTGCAGCTGCTACTGCTGTTTTC 10 >seq287 Length=58314 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||||||| | || || ||||| |||||||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| | ||| || | ||| | || ||| | | || ||| | ||| || Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || || | | ||||| |||| | | | |||||||| || | ||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATAT 212117 ||| | || || || |||||||||||||||||||| || || Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807534819325640