Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1998 185 1e-41 seq14 98.7 1e-15 >seq1998 Length=1172 Score = 185 bits (204), Expect = 1e-41 Identities = 289/413 (70%), Gaps = 3/413 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | | || || || || || ||| | || ||||| ||||| ||| Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 316 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 315 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 256 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 255 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 196 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | || || ||||| ||||| || |||||||| || || || || Sbjct 195 TGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 136 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 135 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 76 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 171078 || || ||| | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 75 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 26 >seq14 Length=24855542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| | || |||||| | || | || || || ||||| | || Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||||| | ||| | ||||| ||| ||||||| || ||||| || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | || | || | || ||||| | || || | | || || ||||| || ||| Sbjct 952076 ATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTCT 952017 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCT 172732 || | || | ||||||||||| || || ||||| || ||||||| ||| || ||||| Sbjct 952016 CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570254407841160