Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17 248 1e-60 seq12 84.2 3e-11 seq2 82.4 1e-10 >seq17 Length=27373735 Score = 248 bits (274), Expect = 1e-60 Identities = 422/610 (69%), Gaps = 4/610 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 |||||| |||||||||||||||| || || |||| | || | ||||| ||||| || Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 | ||| ||||| || || ||||| || ||||||||||| | ||| |||||| || Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAA 24448093 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCA 33477 || || || || || ||||| || || || ||||| | || | | | | || Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAA--GTCTCCGAACCA 24448151 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||| | ||||||| || ||||| || |||||||| | || || |||||| Sbjct 24448152 TCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCA 24448211 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||| | | || || ||||| ||||| | |||||| || | ||||||||| ||| Sbjct 24448212 TGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTAC 24448271 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || ||||| || ||||| || || || ||||| || ||| | |||||| | Sbjct 24448272 ATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCT 24448331 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| ||||| | ||| || | || | ||||||| ||||| || ||| ||| Sbjct 24448332 ACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCA 24448391 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 ||||| || || | ||||| | ||||| | || || || | ||||| | | |||| Sbjct 24448392 GCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAA 24448451 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 | || ||||| ||| | ||| || || || | |||||||| |||||||| || || Sbjct 24448452 TGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTTC 24448511 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||| | ||| || | |||||| |||||||| ||| || | || ||| ||| Sbjct 24448512 TTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGTTT 24448571 Query 33898 GGTGCAAGGA 33907 || || |||| Sbjct 24448572 GGGGCGAGGA 24448581 >seq12 Length=31596830 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| |||||||| || || ||||| | ||| | | || | Sbjct 29957735 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCAACGCTGAGACATCAAATGG 29957794 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||| |||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 29957795 TAGGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGCTACCCTCATCAG 29957853 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| || || || | || | | ||| || | ||||| |||||| Sbjct 29957854 CATGTGCTGAGGCCTCTCTACAACTTTCCCTTGCACTTTTAAGAGATAGGACCTTTCCAG 29957913 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 || || || ||||| || | || |||||| || || ||||| || Sbjct 29957914 GGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATAAATTAT 29957961 >seq2 Length=32417782 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 |||| || | || ||||| ||| || || || |||||| || |||| |||||| Sbjct 14721122 TTTCATAAATGGTGTACAAATTTTCAAATTCTTCCCCCCAACAATCAGCCAAACCAGGAA 14721063 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 |||| || || | ||| ||||| || ||| | |||| || ||||||||||| Sbjct 14721062 CCTCATTGGGGCAAAACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGAT 14721003 Query 63235 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 63280 |||||||||| ||||| ||| |||| |||||| | || |||||| || Sbjct 14721002 CAGGAATCCAGAGAGC-ATAGAATAAATCTCTAGCTCGATGTTCTTC 14720957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931478370040