Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 3e-15 seq7 91.5 1e-13 seq10 82.4 7e-11 >seq16 Length=28979753 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| ||| | || ||| | || | ||| | | Sbjct 1160193 ATGCAGATCTTCGTTAAGACCTTGACTGGGAAAACTATTACCTTGGAGGTGGAAAGCAGC 1160134 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||| ||| || || || || || || || || || Sbjct 1160133 GACACCATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGACCAG 1160074 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | || ||| || ||||| ||||||| | | | | || || || || Sbjct 1160073 CAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGCCGCA-CTTTGGCTGATTACAA 1160015 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| ||||| ||| ||||||| || ||||| ||| | ||||||| Sbjct 1160014 CATTCAAAAGGAATCCACTCTCCATCTTGTGCTGAGGCTTCGTGGAGGAA 1159965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || || || || | || ||| |||| | || | | Sbjct 1160421 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACCCTCGAGGTGGAGAGCAGC 1160362 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 1160361 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAG 1160302 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| || || | || ||| || || |||||||| | | | | | | || || ||||| Sbjct 1160301 CAAAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCA-CTTTGGCTGATTATAA 1160243 Query 26948 CATTCAAAAAGAATCTAC 26965 ||||||||||| ||||| Sbjct 1160242 TATTCAAAAAGAGTCTAC 1160225 >seq7 Length=27069033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | || ||||| |||| ||| | ||| | ||| Sbjct 1829074 AATGCAGATCTTTGTAAAAACCCTCACCGGAAAGACGATAACCCTGGAAGTCGAAAGCTC 1829015 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | |||||| |||||| || || ||||| || || || ||||| Sbjct 1829014 GGATACAATCGATAACGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCACCAGATCA 1828955 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| || | || | | || || || || || |||| || | | || || ||||| Sbjct 1828954 ACAACGATTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTCGCTGATTATAA 1828895 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || || || | |||||||| ||||| ||| | || || Sbjct 1828894 CATCCAAAAGGAGTCAACCCTTCATCTGGTTCTGAGGCTTCGTGGGGG 1828847 >seq10 Length=26335333 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || ||| ||||| ||||| ||||| || ||||| || || Sbjct 23443172 CGACACCATCGATAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 23443113 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | || ||| || ||||| || |||| ||| | | ||||||||| Sbjct 23443112 GCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGATGGCCGAACCCTTGCCGACTATAA 23443053 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| ||| | ||||| || ||| | | || ||||| Sbjct 23443052 TATACAGAAGGAATCCACTCTGCATCTTGTTCTGCGTTTGAGGGGAGG 23443005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650319757680