Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 104 6e-17 seq12 96.9 9e-15 seq11 86.0 2e-11 >seq2 Length=32417782 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || ||||| || | ||| | |||||| |||| | Sbjct 14720321 ATGAAAGATGATAGCATTGAGGGCATATTTGATACTTTGAAGGAGTGTGCTGTTATAAGC 14720380 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 ||| || || ||||||||| | || | || ||| | |||||| ||| ||||||||| Sbjct 14720381 AAGGTAGCTGGAGGAATTGGTCTTTCTGTGCATAATATCCGTGCAACAGG-CAGTTACAT 14720439 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| || || ||||| || ||||| |||||||| |||||| | | || Sbjct 14720440 TCGGGGGACAAATGGGAGTTCCAATGGCCTTGTTCCTATGCTTCGAGTGTTTAATGACAC 14720499 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || || ||||| | | | ||||| Sbjct 14720500 TGCTCGCTATGTTGATCAAGGAGGAGGTAGGAGGAAAGG 14720538 >seq12 Length=31596830 Score = 96.9 bits (106), Expect = 9e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||| | || ||||| || ||| || || || || | ||| || || ||| | Sbjct 29957540 TTGCTTTTTGCTGTGCATGAAAGATGATAGTATTGAAGGCATATATGATACTCTGAAGGA 29957481 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| |||| ||| ||| || ||||||||||| || | |||||| ||||||| Sbjct 29957480 GTGTGCTGTTATCAGCAAATCTGCTGGAGGAATTGGTGTCTCTGTTCACAATATTCGTGC 29957421 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | || |||||||| || ||| || || ||||| | |||||||| | | Sbjct 29957420 TACTG-GTAGCTACATTCGTGGAACAAATGGGACGTCTAATGGCATTATTCCCATGTTAC 29957362 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||||| | ||||||| |||| || || || || ||||| ||| | ||||| Sbjct 29957361 GTGTGTTCAATGATACTGCCCGGTATGTTGATCAAGGAGGAGGCAAGAGGAAAGG 29957307 >seq11 Length=27369018 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 111703 AGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTG 111762 |||| |||||| | ||||| | | || || ||||||||||||||||||||||| || | Sbjct 11623518 AGTTCTATGTAGCCAACGGGGAGTTATCCTGTCAAATGTATCAGCGATCTGCTGACATGG 11623459 Query 111763 GTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATT 111822 | || ||||| || || || |||||| ||| || || | || ||| | || |||||| Sbjct 11623458 GCCTGGGTGTGCCATTCAACATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCATG 11623399 Query 111823 TT 111824 || Sbjct 11623398 TT 11623397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319884278858