Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 seq16 104 2e-17 seq12 96.9 3e-15 seq10 95.1 1e-14 seq7 95.1 1e-14 seq2 87.8 2e-12 seq13 82.4 7e-11 >seq17 Length=27373735 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || ||||| | |||||| | || |||||| || | Sbjct 16111872 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAGACTATTACCCTTGAGGTCGAGAGCAGC 16111931 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || || || ||||| Sbjct 16111932 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 16111991 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || || || | | ||| || || || || || | | | | | | ||| |||||||| Sbjct 16111992 CAAAGGCTTATCTTTGCCGGAAAACAGCTGGAGGACGGCCGCA-CATTAGCCGATTATAA 16112050 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 |||||| || |||||||| |||| Sbjct 16112051 CATTCAGAAGGAATCTACCCTTCA 16112074 >seq16 Length=28979753 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || || || | |||||| |||| || ||| || | Sbjct 1160421 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACCCTCGAGGTGGAGAGCAGC 1160362 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 1160361 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAG 1160302 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || || || | || ||| ||||| |||||||| | | | | | || |||||||| Sbjct 1160301 CAAAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCA-CTTTGGCTGATTATAA 1160243 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||||||||||| ||||| |||| Sbjct 1160242 TATTCAAAAAGAGTCTACCCTTCA 1160219 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| ||| | |||||| | || || || || | Sbjct 1160193 ATGCAGATCTTCGTTAAGACCTTGACTGGGAAAACTATTACCTTGGAGGTGGAAAGCAGC 1160134 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||| ||| || || || || || || || || || Sbjct 1160133 GACACCATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGACCAG 1160074 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | || ||| |||||||| ||||||| | | | | | || ||||| || Sbjct 1160073 CAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGCCGCA-CTTTGGCTGATTACAA 1160015 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| ||||| || | ||| | ||| | || | | |||||| Sbjct 1160014 CATTCAAAAGGAATCCACTCTCCATCTTGTGCTGAGGCTTCGTGGAGGA 1159966 >seq12 Length=31596830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||| ||| | || |||||| || Sbjct 2046598 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAGTCCTCG 2046657 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || ||||| || ||||||||||| Sbjct 2046658 GACACCATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCCGATCAG 2046717 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| |||| || || ||||| || || |||| | | | || ||||| ||| Sbjct 2046718 CAGCGACTAATTTTCGCAGGGAAGCAGCTGGAGGATGGCCGCACTCTCGCTGATTACAAC 2046777 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || ||||| |||| Sbjct 2046778 ATCCAGAAGGAGTCTACTCTTCA 2046800 >seq10 Length=26335333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23976 TTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATC 24035 ||||||| | ||| ||||| | || || ||||| | || || || | ||||| || Sbjct 23443702 TTTTAGCTACCCAATATGCAGATTTTCGTTAAAACCCTCACCGGCAAGACCATTACTCTC 23443643 Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 || |||||| | ||| |||||||| | |||||| ||||| ||||| ||||| Sbjct 23443642 GAGGTCGAGAGCTCCGATACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGG 23443583 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || || || ||||| || ||| |||| | | ||| || || || ||||||| | | | Sbjct 23443582 ATTCCACCGGATCAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACT 23443523 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | |||||||||||| || || || ||||| Sbjct 23443522 TTGGCCGATTATAACATCCAGAAGGAGTCTAC 23443491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 23992 TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACG 24051 |||| | || || || || || ||||||||| | |||||| | ||||| ||| || || Sbjct 4732809 TGCAGATTTTCGTTAAGACCTTGACTGGAAAAACTATTACCTTGGAAGTGGAGAGCAGCG 4732868 Query 24052 ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAAC 24111 ||||||| || | ||||| ||| ||| ||||||||||| || || || | || | Sbjct 4732869 ACACCATTGATAATGTCAAGGCAAAAATTCAGGACAAAGAAGGTATTCCACCAAACCAGC 4732928 Query 24112 AGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGC-GATTATAA 24169 |||| ||||| | | ||| ||||| || |||| | ||| || | || ||| | || Sbjct 4732929 AGAGGCTGATCTTTGCCGGGAAGCAGCTGAAAGACAGCCAG--ACTTTGGCTGATCACAA 4732986 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| || ||||| || Sbjct 4732987 CATTCAGAAGGAATCCAC 4733004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| ||||| |||||||| ||||| || || Sbjct 23443172 CGACACCATCGATAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 23443113 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||| | || ||| |||||||| || |||| | ||| | | ||| ||||| Sbjct 23443112 GCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGATGGCCGAACCCTTGCCGACTATAA 23443053 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | || | | ||||| ||||| Sbjct 23443052 TATACAGAAGGAATCCACTCTGCATCTTGTTCTGCGTTTGAGGGGAGG 23443005 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | || || | || || ||| | Sbjct 23447262 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACTATCACTCTTGAGGTGGAGAGTTCC 23447203 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| ||||| |||||||| || || ||||| Sbjct 23447202 GACACAATTGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGATCAG 23447143 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| || || || ||||||| | ||| | | |||||||||| Sbjct 23447142 CAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTTGCCGATTATAAC 23447083 Query 24171 ATTCAAAAAGAATCTACA 24188 || || || || || ||| Sbjct 23447082 ATCCAGAAGGAGTCGACA 23447065 >seq7 Length=27069033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | || ||||| |||| ||| | |||||||| | Sbjct 1829074 AATGCAGATCTTTGTAAAAACCCTCACCGGAAAGACGATAACCCTGGAAGTCGAAAGCTC 1829015 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | |||||| |||||| || || ||||| || || || ||||| Sbjct 1829014 GGATACAATCGATAACGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCACCAGATCA 1828955 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | | || ||||| || || |||| || | | || |||||||| Sbjct 1828954 ACAACGATTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTCGCTGATTATAA 1828895 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| ||||| || || || ||||| Sbjct 1828894 CATCCAAAAGGAGTCAACCCTTCAT 1828870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || || ||| | Sbjct 1829301 ATGCAGATCTTCGTCAAGACTCTGACTGGTAAGACTATAACCCTAGAGGTTGAGAGCTCT 1829242 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 1829241 GATACCATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 1829182 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | | ||| ||||| || ||||||| | | || ||| |||||||| Sbjct 1829181 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGTCGGA-CGCTAGCAGATTATAA 1829123 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || ||||| || | ||| | || | ||||||| |||||| Sbjct 1829122 CATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGAGGA 1829074 >seq2 Length=32417782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||||||||||||||||| | || || ||| | ||| Sbjct 15025632 GACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATTTTTGCTGGAAAACAATTGGAA 15025573 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || ||| | || ||||| ||||| ||||| || || || |||| | || || Sbjct 15025572 GATGGTAG-AACATTGGCTGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTTTT 15025514 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 15025513 GAGGCTTAGGGGAGGAACTATGAT 15025490 >seq13 Length=28119335 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||| ||| | || || ||| | Sbjct 2662208 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCTTCG 2662267 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 2662268 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 2662327 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| || || || | | | | || ||||| ||| Sbjct 2662328 CAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACTCTCGCTGATTACAAC 2662387 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || ||||| | ||| Sbjct 2662388 ATCCAGAAGGAGTCCACTCTTCATCTGGTG 2662417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925420752945