Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq17 89.7 4e-13 seq16 89.7 4e-13 seq10 89.7 4e-13 >seq17 Length=27373735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| | || ||||| || |||||| | || ||| |||| Sbjct 16111872 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAGACTATTACCCTTGAGGTCGAGAGCAGC 16111931 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || ||||| | ||| ||||| Sbjct 16111932 GACACCATTG-ACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCA 16111990 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | ||| || ||||| | || || | | || | ||||||||||| Sbjct 16111991 GCAAAGGCTTATCTTTGCCGGAAAACAGCTGGAGGACGGCCGCACATTAGCCGATTATAA 16112050 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || || ||||| Sbjct 16112051 CATTCAGAAGGAATCTAC 16112068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || ||||| ||||||||||| || |||| ||| |||| Sbjct 16111644 ATGCAGATCTTCGTTAAGACCCTCACCGGAAAAACCATCACTCTCGAGGTCGAGAGCAGC 16111703 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || ||| ||||| ||||||||||| |||| || || Sbjct 16111704 GACAC-CATCGACAACGTCAAAGCCAAAATCCAGGATAAAGAAGGTATCCCACCAGACCA 16111762 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || ||| | || || | | ||| |||| ||||| || Sbjct 16111763 GCAGCGTCTCATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCTTGGCTGATTACAA 16111822 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||| ||||| ||||| ||| Sbjct 16111823 CATCCAAAAGGAGTCGACT 16111841 >seq16 Length=28979753 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || | || || ||||| |||||| | || ||| |||| Sbjct 1160193 ATGCAGATCTTCGTTAAGACCTTGACTGGGAAAACTATTACCTTGGAGGTGGAAAGCAGC 1160134 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||||| ||||| || || |||| || ||| Sbjct 1160133 GACACCATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGACCAG 1160074 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | || || || ||| | ||||||| | || |||| ||||| ||| Sbjct 1160073 CAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGCCGCACTTTGGCTGATTACAAC 1160014 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||| || || ||| | ||| | ||| |||| | || ||||||| Sbjct 1160013 ATTCAAAAGGAATCCACTCTCCATCTTGTGCTGAGGCTTCGTGGAGGAA 1159965 >seq10 Length=26335333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| ||||| || || |||||||| |||| ||| | Sbjct 23443690 AATATGCAGATTTTCGTTAAAACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGC 23443631 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||| || | | |||| || ||| || || || || ||||| | || || Sbjct 23443630 TCCGATACCATCG-ACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCGGA 23443572 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||| | || | ||| || ||||| | ||||||| | || |||||||||| Sbjct 23443571 TCAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACTTTGGCCGATTA 23443512 Query 115462 TAACATTCAAAAAGAGTCTACTATACAT 115489 |||||| || || ||||||||| | ||| Sbjct 23443511 TAACATCCAGAAGGAGTCTACTCTCCAT 23443484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| || || || || || | || |||| | Sbjct 23447262 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACTATCACTCTTGAGGTGGAGAGTTCC 23447203 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || || || |||||| |||| ||||||| Sbjct 23447202 GACACAATTGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGATCAG 23447143 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | || || ||||| | ||||||| | |||| | |||||||||||| Sbjct 23447142 CAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTTGCCGATTATAAC 23447083 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || || ||||| || | || |||| |||| | || ||||||| Sbjct 23447082 ATCCAGAAGGAGTCGACACTCCACCTGGTTCTGAGGCTTCGTGGAGGAA 23447034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425333533746280