Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq17 89.7 4e-13 seq2 89.7 4e-13 seq10 87.8 1e-12 seq13 84.2 2e-11 >seq1 Length=34959721 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || || |||||||| || |||||||||||||| | ||| | |||| || Sbjct 31554302 ACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTCCGGCCGTCTTCT 31554361 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | |||||| || || | || || ||||| |||||| || | |||||| ||||| || Sbjct 31554362 AGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGG 31554421 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || |||||| | | | | |||||| | ||| || | || ||||| | Sbjct 31554422 ATCTTGGC--CTTCACATTGTCGATAGTGTCCGAAGACTCTACCTCTAGAGTTATGGTCT 31554479 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || |||||||| || |||||||| || Sbjct 31554480 TACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 31554513 >seq17 Length=27373735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| |||||||| || |||| ||| | ||||||| | ||| Sbjct 16111846 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCAAGTTGC 16111787 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || || ||||| ||||| || | || ||||| || || || Sbjct 16111786 TTTCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCTTTATCCTGGATTTTG 16111727 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | ||||||| | ||| || | |||||||||||||||| Sbjct 16111726 GCT--TTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTTTTTCCGG 16111669 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| Sbjct 16111668 TGAGGGTCTTAACGAAGATCTGCAT 16111644 >seq2 Length=32417782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||||| |||| || || || ||||||||||| |||||||| || ||| Sbjct 15025499 CCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAGCC 15025558 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || ||| |||| || | |||||| || ||| Sbjct 15025559 AATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGAGGA 15025618 Query 16829 ACGCCCTCTTTGTC 16842 | ||| || ||||| Sbjct 15025619 ATGCCTTCCTTGTC 15025632 >seq10 Length=26335333 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| ||||| ||||| ||||||||||| || || | ||| | | ||| Sbjct 23442792 AGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCGAGGGTCCTCCCATCC 23442851 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || || ||||| ||||| ||| | ||| || ||||| Sbjct 23442852 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 23442911 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | |||||| | || || | ||| |||| Sbjct 23442912 TGGATCTTGGCT--TTAACATTGTCGATTGTGTCGGAGCTTTCAACCTCTAGGGTTATGG 23442969 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| |||||||| || |||||||| Sbjct 23442970 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 23443003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || |||||||| |||| || || || |||||||| || ||||| || ||||| Sbjct 23447036 CCTCCACGAAGCCTCAGAACCAGGTGGAGTGTCGACTCCTTCTGGATGTTATAATCGGCA 23447095 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | ||||| || || | || |||| ||| || || || Sbjct 23447096 AGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCAGGTGGG 23447155 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | |||||| |||| Sbjct 23447156 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTATCAATTGTGTCGGAACTCTCCA 23447213 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || ||||| || ||||||||||| |||||||| Sbjct 23447214 CCTCAAGAGTGATAGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 23447262 >seq13 Length=28119335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||| || ||||||||||| || |||||||| || || Sbjct 2662434 CCGCCTCGGAGACGAAGCACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCG 2662375 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || || || || | || |||||||| || || ||| Sbjct 2662374 AGAGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGG 2662315 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 2662314 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTGTCGATAGTGTCCGAAGACTCAA 2662257 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || || || || ||||| || || |||||||| Sbjct 2662256 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2662208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405078032176810