Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq17 241 2e-58 seq12 89.7 7e-13 >seq17 Length=27373735 Score = 241 bits (266), Expect = 2e-58 Identities = 419/602 (70%), Gaps = 8/602 (1%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 |||||| |||||||||||||| | || || |||| | || || ||||| ||||| || Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 | ||| ||||| || || ||||| || ||||||||||| | |||| | | | ||||| | Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCAGAGA 24448092 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--C 32833 | || || || || || ||||| || || || ||||| | || | | | | | Sbjct 24448093 AAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAA--GTCTCCGAACC 24448150 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||| | ||||||| || ||||| || |||||||| | || || || || Sbjct 24448151 ATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGC 24448210 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 || ||| | | || || ||||| ||||| | ||| || || | ||||||||| || Sbjct 24448211 ATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTA 24448270 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGG 33012 ||| || || ||||| || ||||| || ||||| ||||| || || ||| | |||||| | Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCA-CGAGCCTCAG 24448329 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | ||| ||||| | ||| || | || | ||||||| ||||| || ||| || Sbjct 24448330 CTACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGG 24448389 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | ||||| || || | ||||| | ||||| | || || || | ||||| | | || Sbjct 24448390 CAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCC 24448449 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 ||| || ||||| ||| | ||| || || || | |||||||| |||||||| || | Sbjct 24448450 AATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTT 24448509 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252 | || ||||| | ||| || | ||||||||||||| || ||| || | || ||| | Sbjct 24448510 TCTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGT 24448569 Query 33253 TT 33254 || Sbjct 24448570 TT 24448571 >seq12 Length=31596830 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||||||| ||||| ||||| | ||| | | || | Sbjct 29957735 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCAACGCTGAGACATCAAATGG 29957794 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||| |||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 29957795 TAGGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGCTACCCTCATCAG 29957853 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| || || || | || | | ||| || | ||||| |||||| Sbjct 29957854 CATGTGCTGAGGCCTCTCTACAACTTTCCCTTGCACTTTTAAGAGATAGGACCTTTCCAG 29957913 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || || || ||||| || | || |||||| || || ||||| || Sbjct 29957914 GGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATAAATTAT 29957961 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || | ||||| |||||||| || Sbjct 29957321 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCC 29957380 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || ||||| || || || ||||| ||| | ||||||||||| || || Sbjct 29957381 ATTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGA 29957440 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || | |||||||| || Sbjct 29957441 GACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 29957500 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||| || ||||||||||| ||||| Sbjct 29957501 GCCTTCAATACTATCATCTTTCATG 29957525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616008712400