Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1998 217 2e-51 seq14 163 3e-35 seq287 102 9e-17 seq151 96.9 4e-15 >seq1998 Length=1172 Score = 217 bits (240), Expect = 2e-51 Identities = 295/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| |||||||| ||||||| || ||| | ||| | ||||| Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || |||||||| | || || ||||| || ||||| ||||| || ||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 || || | || |||||| | ||||| ||||| || || |||||||| || | || | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || || || ||| | || || || || || |||||||| ||||| |||||||||| Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | || || || ||||||| |||| | || | |||||| | | || | | Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 |||||||||||||| |||||| | || ||| || |||||||| ||||||||| || Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 50 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTAT 166488 ||||| || || ||||||||||| || | || || ||| || ||||| Sbjct 49 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 163 bits (180), Expect = 3e-35 Identities = 186/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 167968 GACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTT 168027 |||||| | || ||||||||||| |||||||| |||||||| || | || |||||| || Sbjct 952206 GACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTT 952147 Query 168028 TGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCAT 168087 ||| ||||||| | |||| | |||||| || ||||||||| | || || || || | Sbjct 952146 TGGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 952087 Query 168088 GGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGA 168147 ||| | |||| || || | || | ||||||| | || ||| | ||||| ||||| Sbjct 952086 GGGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 168148 CTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAA 168207 ||| || |||||| || | | |||||||| ||||| || ||||| |||||||| | || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 168208 AAACATCCTC 168217 ||| || ||| Sbjct 951966 AAATATTCTC 951957 >seq287 Length=58314 Score = 102 bits (112), Expect = 9e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 |||||||||||||| |||||| | || || || ||||| |||||||||||| || Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 ||||| || || | ||||||| | || || ||| || ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 || || ||| | |||||||| || | | | | ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||| | || |||||||||||||| |||||||| || || || | || ||| |||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 166621 T 166621 | Sbjct 44414 T 44414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 166727 AAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCC 166786 |||| ||| | || || || ||| | |||||||||||||| || || || ||| ||||| Sbjct 17766 AAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCC 17707 Query 166787 AATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTG 166846 |||| | ||||||||||||| || | || || ||||| | || |||||| | | Sbjct 17706 AATA----TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAG 17651 Query 166847 TCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCA 166906 | ||||| | ||||||| | | | | |||||| ||| | || | ||| || | ||| Sbjct 17650 TAGGTATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAGCCTAAATGATTTTG 17591 Query 166907 ACTTCAACCA 166916 | |||||||| Sbjct 17590 ATTTCAACCA 17581 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 166730 AAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAAT 166789 || || | || || || || || |||||||||||||| || || || ||| ||| |||| Sbjct 44360 AAAAAAAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGAACTTTCAAT 44301 Query 166790 ACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCG 166849 | | ||||||||||||| || | || || ||||| | || |||||| || | Sbjct 44300 A----TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTACGGTAG 44245 Query 166850 GTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 166909 ||| | ||||||| | | | | |||||| ||| | || ||||| || | ||| || | Sbjct 44244 ATATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATT 44185 Query 166910 TCAACCA 166916 ||||||| Sbjct 44184 TCAACCA 44178 >seq151 Length=113734 Score = 96.9 bits (106), Expect = 4e-15 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 166738 ACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 166797 || || || ||| | |||||||||||||| || || || ||| |||||||| | Sbjct 4506 ACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATG----TAT 4451 Query 166798 TTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 166857 ||||||||||||| || | || || ||||| | || |||||| | || ||||| | | Sbjct 4450 TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAG 4391 Query 166858 TTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 |||||| | | | | |||||| ||| | || ||||| || | ||| || |||||||| Sbjct 4390 TTTACTATTTTCGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567217684482400