Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq17 246 3e-60 seq5 95.1 1e-14 seq15 91.5 2e-13 seq6 91.5 2e-13 seq1 91.5 2e-13 seq3 89.7 6e-13 seq725 87.8 2e-12 seq2 87.8 2e-12 seq16 86.0 7e-12 seq18 82.4 9e-11 seq14 82.4 9e-11 >seq17 Length=27373735 Score = 246 bits (272), Expect = 3e-60 Identities = 421/602 (70%), Gaps = 9/602 (1%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 || ||||| || ||| || || ||||| ||||| || |||||||| || |||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaa 93207 || || || | ||||| || ||||| ||||||||||||| ||| || || ||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCAGAGAA 24448093 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||| || ||||| ||||| || | | | || || ||| | | || || Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGA---ACC 24448150 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||| | | |||||| || || ||||| | |||||| | || ||||| || Sbjct 24448151 ATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGC 24448210 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | ||| | || ||| | || ||| || || || || | || ||| || Sbjct 24448211 ATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTA 24448270 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 ||| ||||| || | |||||| || || ||||||||||| || ||| | ||| || | Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGC 24448330 Query 93448 GATCTGCACTT-CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | ||| |||| ||| | |||| | | ||||||||||| ||||||||||| || | Sbjct 24448331 TACCTGAACTTCCTTCATAAAA-CGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGG 24448389 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || || | | ||| | ||||| || |||||||| | || | |||| Sbjct 24448390 CAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCC 24448449 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||| | ||||||| || |||||||| || ||| |||||||||| ||||| || |||| Sbjct 24448450 AATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTT 24448509 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGG 93685 | |||||||| |||||||| | | ||||||||||||| || || ||| ||||||| ||| Sbjct 24448510 TCTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACAT-ACAGAAACGATCTGGG 24448568 Query 93686 TT 93687 || Sbjct 24448569 TT 24448570 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 16184059 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16184116 Query 126328 TTCGAACCCCACACCTGACAAATTATTAT 126356 ||| || |||||| ||| |||||| |||| Sbjct 16184117 TTCAAATCCCACAGCTGTCAAATTTTTAT 16184145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/94 (81%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 23857266 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 23857209 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||| || |||||| ||| | |||||| ||| Sbjct 23857208 GGGTTCAAATCCCACAGCTGTC--ATTATTTTTG 23857177 >seq5 Length=28438989 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/102 (81%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 20795767 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 20795824 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 ||||||||| || ||||| ||||||| ||||||| || || Sbjct 20795825 CGTGGGTTCAAATCCCACTTCTGACAACCTATTATTTGATTT 20795866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 20799005 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 20799062 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| |||||| ||||||| Sbjct 20799063 CGTGGGTTCAAATCCCACTTCTGACAGATTATTA 20799096 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 20791670 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 20791727 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 20791728 CGTGGGTTCAAATCCCACTTCTGACAA 20791754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 20799189 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 20799246 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 20799247 CGTGGGTTCAAATCCCACTTCTGACA 20799272 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 22025407 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 22025464 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 22025465 CGTGGGTTCAAATCCCACTTCTGACAA 22025491 >seq15 Length=26192760 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 4911674 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 4911617 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAAT-TATTATT 126357 ||||||||| || ||||| ||||||||| |||| || Sbjct 4911616 CGTGGGTTCAAATCCCACTTCTGACAAATGTATTTTT 4911580 >seq6 Length=27939960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/95 (82%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1996840 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 1996783 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||| ||||| Sbjct 1996782 GGCGTGGGTTCAAATCCCACTTCTGACATTTTATT 1996748 >seq1 Length=34959721 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/106 (81%), Gaps = 9/106 (8%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 11571159 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 11571102 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||||| || ||||| ||||| ||| ||||| |||||| Sbjct 11571101 GGCGTGGGTTCAAATCCCACTTCTGAC--ATTTTTATT-TAATTTT 11571059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 18629037 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 18628980 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 18628979 GCGTGGGTTCAAATCCCACTTCTGACA 18628953 >seq3 Length=29412403 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 15767460 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 15767403 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG 126358 ||| || |||||| ||| |||| | |||||| Sbjct 15767402 TTCAAATCCCACAGCTGTCAAAATTTTATTG 15767372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 10478086 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 10478029 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| ||||||||| Sbjct 10478028 GCGTGGGTTCAAATCCCACTTCTGACAAAT 10477999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 15780831 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 15780888 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 15780889 GGGTTCAAATCCCACAGCTGTCAAA 15780913 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 15780682 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 15780625 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 15780624 GGGTTCAAATCCCACAGCTGTCAA 15780601 >seq725 Length=16201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 8/104 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 10397 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 10340 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||| || ||||| ||||| |||||| || | |||| Sbjct 10339 CGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTTCATTTTT 10298 >seq2 Length=32417782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1918235 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1918178 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||| ||| || Sbjct 1918177 CGTGGGTTCAAATCCCACTTCTGACAGATTTTT 1918145 >seq16 Length=28979753 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1142340 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1142283 Query 126328 TTCGAACCCCACACCTGACAAATTAT-TATT 126357 ||| || |||||| ||| ||||| || |||| Sbjct 1142282 TTCAAATCCCACAGCTGTCAAATAATATATT 1142252 >seq18 Length=25231592 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 562124 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 562181 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| || ||| Sbjct 562182 GGGTTCAAATCCCACAGCTGTCATATT 562208 >seq14 Length=24855542 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 21704965 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 21704908 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| | || ||||| Sbjct 21704907 GCGTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATT 21704872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846746225560