Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 seq17 82.4 5e-11 seq2 82.4 5e-11 >seq10 Length=26335333 Score = 98.7 bits (108), Expect = 7e-16 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 21835 TGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGCA 21893 |||| || || |||| || || || || ||||| |||||| ||||| ||| ||| || Sbjct 4732809 TGCAGATTTTCGTTAAGACCTTGACTGGAAAAACTATTACCTTGGAAGTGGAGAGCAGC- 4732867 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| || ||||| ||| | || |||||| Sbjct 4732868 GACACCATTGATAATGTCAAGGCAAAAATTCAGGACAAAGAAGGTATTCCACCAAACCAG 4732927 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || || || |||| | ||| |||| ||| |||| Sbjct 4732928 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGAAAGACAGCCAGACTTTGGCTGATCACAAC 4732987 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||| ||||| || Sbjct 4732988 ATTCAGAAGGAATCCACTCTCCA 4733010 >seq17 Length=27373735 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || || | || || || || || ||||| |||||| |||| ||| ||| || Sbjct 16112100 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATTACCCTGGAGGTGGAGAGCAGC 16112159 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||||| || || || ||| | || | | || Sbjct 16112160 -GACACCATTGATAATGTTAAGGCAAAAATTCAGGACAAGGAAGGTATCCCACCAGATCA 16112218 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||| || || || || || |||||| ||| |||| |||||||| Sbjct 16112219 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 16112278 Query 22013 TATTCAGAAGGAATCTACT 22031 |||||||||||||| ||| Sbjct 16112279 CATTCAGAAGGAATCCACT 16112297 >seq2 Length=32417782 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||||| || |||||||| |||||| | |||||| | ||| |||| |||||| Sbjct 15025608 CAACAGAGACTGATTTTTGCTGGAAAACAATTGGAAGATGGTAGAACATTGGCTGATTAC 15025549 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT-ACGTTTACGAGGAGGA 22061 || || || ||||| || |||||||| |||| || | | ||| | |||||| Sbjct 15025548 AACATCCAAAAGGAGTCGACTCTTCACCTGGTTTTGAGGCTTA-GGGGAGGA 15025498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358115987779726