Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 seq11 93.3 3e-14 seq10 93.3 3e-14 seq16 84.2 2e-11 seq1 84.2 2e-11 seq2 82.4 6e-11 >seq13 Length=28119335 Score = 104 bits (114), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || |||||||||||||| ||| ||||||||| ||||||||||| || Sbjct 2662434 CCGCCTCGGAGACGAAGCACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCG 2662375 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| |||| ||||| ||||| || ||||| ||||||||||| || Sbjct 2662374 AGAGTGCGGC-CGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGG 2662316 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| || | || | | | || | ||| || Sbjct 2662315 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG---TCGATAGTGTCCGAAGACTC 2662259 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 2662258 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2662208 >seq11 Length=27369018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || ||| ||||||||| || ||||| ||||| Sbjct 5723450 CCACCACGCAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGC- 5723392 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || | || |||| ||||| |||||||| |||| | |||||| || || Sbjct 5723391 AAGTGTACGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 5723332 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| || ||| ||| || ||| | | | | |||||| || || || Sbjct 5723331 GATCCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAG-AGCTTTCCA 5723273 Query 34080 -TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || ||||| || || || || |||||||||||||||||||| Sbjct 5723272 CTTCCAAAGTAATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 5723224 >seq10 Length=26335333 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 33892 CAATC-GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTT 33950 ||||| |||||| || | || || ||||| || ||||| ||| ||||||||| || || Sbjct 23446798 CAATCAGAAACCACCACGGAGACGAAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATT 23446857 Query 33951 GTAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCT 34009 |||||| || || || ||| | || ||||||||||| || ||||| ||||| | ||| | Sbjct 23446858 GTAATCAGC-AAGCGTACGCCCATCTTCCAATTGCTTCCCTGCAAAGATCAGCCTCTGTT 23446916 Query 34010 GATCCACCGGCACGCTCTCTTTGTCCATAATTTTT 34044 |||| || | | |||||||||| |||||| Sbjct 23446917 GATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTT 23446951 >seq16 Length=28979753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| |||||| ||||| || ||| ||||| |||||||||||||| ||| Sbjct 1159967 CCTCCACGAAGCCTCAGCACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 1160026 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| |||||| ||||| || ||||| | |||||| || || Sbjct 1160027 AAAGTGCGGCCATCTTCCAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1160086 Query 34021 ACGCTCTCTTTGTCCATAATTTTT 34044 | | ||| || ||| ||||||| Sbjct 1160087 ATTCCCTCCTTATCCTGAATTTTT 1160110 >seq1 Length=34959721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| |||| |||||||||||| || |||||||||||||||||| || | | Sbjct 31554284 CCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTC-GGC 31554342 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | ||| || || || || || ||||||||||| ||| || Sbjct 31554343 AAGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGG 31554402 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| ||||| || || ||| || | || | | | || | ||| || Sbjct 31554403 AATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG---TCGATAGTGTCCGAAGACTC 31554459 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| ||||| || ||||| ||||| ||| Sbjct 31554460 TACCTCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTT 31554514 >seq2 Length=32417782 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || ||||| ||||| || |||||| || ||||||||||| ||| Sbjct 15025499 CCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAGCC 15025558 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||||||| || || ||||| ||||| | ||| ||||| Sbjct 15025559 AATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATC 15025611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052629659238