Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq17 116 4e-21 seq10 109 5e-19 seq11 105 7e-18 seq1 102 8e-17 seq16 89.7 5e-13 seq5 89.7 5e-13 >seq17 Length=27373735 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || || ||||| |||||| ||||| || |||| | Sbjct 16111837 GACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCAAGTTGCTTTCCGGCA 16111778 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||||||||| || |||||| ||| | Sbjct 16111777 AAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCTTTATCCTGGATTTTGGCTTTGACG 16111718 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | ||| ||||||| || | ||||| || || || || || Sbjct 16111717 TTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTTTTTCCGGTGAGGGTCTTA 16111658 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 16111657 ACGAAGATCTGCAT 16111644 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||| || || ||| || || || || || || |||| Sbjct 16112293 GATTCCTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTCCCGGCG 16112234 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || || || |||||||| ||||| ||| |||||| |||| Sbjct 16112233 AAGATCAGCCTCTGCTGATCTGGTGGGATACCTTCCTTGTCC-TGAATTTTTGCCTTAAC 16112175 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| | ||||||||| | || | ||||| ||||||| || || Sbjct 16112174 ATTATCAATGGTGTCGCTGCTCTCCACCTCCAGGGTAATAGTTTTTCCAGTCAAGGTCTT 16112115 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 16112114 CACGAAAATCTGCAT 16112100 >seq10 Length=26335333 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| | | || |||| |||||| ||||| || |||| Sbjct 4732546 GACTCCTTTTGCATGTTGTAATTGGCCAAGGTACAGCCGTCCTCAAGTTGCTTTCCGGCG 4732487 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || ||||||||||| |||||| ||| | Sbjct 4732486 AAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTAGATTTTGGCTTTGATG 4732427 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCG-TCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| | |||| ||||| | | | | ||||| ||||| ||||| || Sbjct 4732426 TTGTCGATGGTGTCGCTGCACTCGACCTCAAGAGTTAATGGTTTTTCCAGTGAGAGTCTT 4732367 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4732366 AACGAAGATCTGCAT 4732352 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||| || || ||| | ||| | || || || |||| | Sbjct 4733001 GATTCCTTCTGAATGTTGTGATCAGCCAAAGTCTGGCTGTCTTTCAGCTGCTTCCCGGCA 4732942 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| |||| || || |||||||||||||| ||| |||||| || | Sbjct 4732941 AAGATCAGCCTCTGCTGGTTTGGTGGAATACCTTCTTTGTC-CTGAATTTTTGCCTTGAC 4732883 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| | |||||| || | || | ||||| ||||||| || || Sbjct 4732882 ATTATCAATGGTGTCGCTGCTCTCCACTTCCAAGGTAATAGTTTTTCCAGTCAAGGTCTT 4732823 Query 138600 TACAAAAATCTGCA 138613 || |||||||||| Sbjct 4732822 AACGAAAATCTGCA 4732809 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | ||| | | |||||||| || ||||| || ||| Sbjct 23443460 GCCGCCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGC 23443519 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || || |||||||||| | |||| | | || || ||||| || Sbjct 23443520 CAAAGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGG 23443579 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | || | ||| |||| ||| || Sbjct 23443580 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 23443639 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || ||||| || ||||||||||| Sbjct 23443640 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTTTTAACGAAAATCTGCAT 23443687 >seq11 Length=27369018 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||||||||| |||||||| | || || ||||| Sbjct 5723204 ACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGGCCATCCTCT 5723145 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || ||||| | | |||| || | ||| ||||| || || |||||||||||||| | Sbjct 5723144 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGG 5723085 Query 138526 ATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 || || |||| ||||| | | |||||| | |||||||| | || | || || Sbjct 5723084 ATCTTAGCCTTTACATTGT-CAATGGTGTCTGAACTTTCCACCTCCAAAGTGATTGTCTT 5723026 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||||||||| |||||||| Sbjct 5723025 GCCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 >seq1 Length=34959721 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| ||||| || | ||| | | |||||||| ||||||||||||||| Sbjct 31554284 CCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCA 31554343 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || |||||||| || | |||| || ||||| |||||||| || Sbjct 31554344 AGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGA 31554403 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | ||||| | ||||| || Sbjct 31554404 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG-TCGATAGTGTCCGAAGACTCTAC 31554462 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||| || || ||||| || || |||||||| Sbjct 31554463 CTCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 31554510 >seq16 Length=28979753 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || |||||||| ||| | Sbjct 1160423 CCACCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGCC 1160482 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || |||| |||| |||||||| ||||| || || Sbjct 1160483 AAGGTACGGCCATCCTCAAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGA 1160542 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | ||| | | || | ||| || | || || Sbjct 1160543 ATCCCTTCCTTATCT-TGAATTTTGGCTTTGACGTTATCAATGGTATCACTGCTTTCGAC 1160601 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| || || || |||||||||||||| Sbjct 1160602 CTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 1160649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | ||||| |||||||| || || || | Sbjct 1160195 CCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGCC 1160254 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| ||||| || || |||| |||| || | || ||||| ||||| Sbjct 1160255 AAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGA 1160314 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | |||| | | ||||||| | ||||| Sbjct 1160315 ATTCCTTCCTTGTCC-TGAATCTTAGCCTTGACGTTGT-CAATGGTGTCGCTGCTCTCCA 1160372 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || |||| ||||| || || |||||||| Sbjct 1160373 CCTCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 1160421 >seq5 Length=28438989 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||||| || || || | |||||||||| |||||||||||||| Sbjct 727731 CCACCCCTCAAACGCAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAGTCTGCA 727672 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| || | |||| || ||||| || ||||| || Sbjct 727671 AGGGTCCGTCCATCTTCCAGTTGTTTTCCTGCGAAGATGAGGCGCTGCTGATCCGGTGGG 727612 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | ||||| | || || || Sbjct 727611 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTG-TCGATAGTGTCCGAGGATTCTAC 727553 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || ||||| || || |||||||| Sbjct 727552 CTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 727505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249875577680