Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq10 105 5e-18 seq15 98.7 7e-16 seq11 96.9 2e-15 seq4 96.9 2e-15 seq7 91.5 1e-13 seq16 89.7 4e-13 >seq10 Length=26335333 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| | ||| | ||| | ||| || || || |||||||||||||| | Sbjct 23442777 CCGCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCG 23442836 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | || || | || || || || | |||| |||||| ||||| ||| Sbjct 23442837 AGGGTCCTCCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 23442896 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| ||| | || || || ||| |||| || Sbjct 23442897 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAACC 23442956 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| ||||| || || ||||| ||||| || || || |||||| Sbjct 23442957 TCTAGGGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATA 23443004 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || ||||| |||||| || | || |||| |||| || Sbjct 23442573 TGGAGTGTGGACTCCTTCTGGATGTTATAATCGGCAAGGGTCCTTCCGTCCTCTAGCTGC 23442632 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| ||||| ||||| ||| ||||||||||| || || ||| Sbjct 23442633 TTCCCGGCGAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTGGATCTTG 23442692 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||| |||| || |||| || ||||| || || || Sbjct 23442693 GCCTTCACGTTATCAATTGTGTCGGAGCTTTCAACCTCTAGTGTTATGGTCTTGCCGGTG 23442752 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| || ||||| Sbjct 23442753 AGAGTTTTGACAAAGATCTGCAT 23442775 >seq15 Length=26192760 Score = 98.7 bits (108), Expect = 7e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGC 15020 |||| || | ||| | ||| || ||||| || || |||||||| || || ||| | Sbjct 17285878 CTTAGCACGAGATGGATGGTTGATTCTTTCTGGATATTGTAATCAGCCAAGG-TTCGGCC 17285820 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 ||||| | | || |||||| | ||||| | ||| ||||| ||| ||||||||||| Sbjct 17285819 ATCTTCAAGCTACTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGGATTCCTTCCTT 17285760 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 ||| || ||| || ||| | || || |||||||| | || || || | ||||| Sbjct 17285759 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCAACCTCGAGAGTAAT 17285700 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||| || || ||||| |||| || || || |||||||||| Sbjct 17285699 GGTCTTTCCGGTCAGGATTTTCACGAATATCTGCATATTTG 17285659 >seq11 Length=27369018 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14979 GGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 |||||| || || || || |||||||| || | ||| | || || | ||||| || Sbjct 5724105 GGTAGACTCCTTCTGGATATTGTAATCAGCAAGTGTCCTCCCATCCTCGAGCTGTTTTCC 5724046 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 ||| ||||||| | ||| || || ||| || ||||||||||| ||||| || Sbjct 5724045 AGCAAATATCAATCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCCTGGATTTTAGCCTT 5723986 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 ||| | || |||||||| | | ||||| || ||||||||||| || || || || || Sbjct 5723985 CACATTGTCAATAGTATCTGAACTCTCTACCTCCAAGGTAATGGTCTTCCCGGTAAGGGT 5723926 Query 15159 TTTTACAAAAATTTGCAT 15176 || ||||| || ||||| Sbjct 5723925 CTTCACAAAGATCTGCAT 5723908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || ||||| || ||||| || || | | | || ||| Sbjct 5723204 ACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGGCCATCCTCT 5723145 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| | ||| ||||| |||||| ||||| ||||| Sbjct 5723144 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGG 5723085 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || |||||| | || || || || | |||| || || || || || || || Sbjct 5723084 ATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCACCTCCAAAGTGATTGTCTTG 5723025 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| || ||||| Sbjct 5723024 CCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 >seq4 Length=28735499 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 14979 GGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 |||||| || || || || |||||||| || | || | || || | || || || Sbjct 24493002 GGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTTCCATCCTCAAGCTGCTTTCC 24493061 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 |||| | ||||| | ||| || || |||||||||||||||||| ||||| || Sbjct 24493062 AGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCCTT 24493121 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 || | || |||||||| | | ||||| || || |||||||| || || || ||||| Sbjct 24493122 CACGTTGTCAATAGTATCCGAACTCTCTACCTCCAAAGTAATGGTCTTCCCAGTAAGAGT 24493181 Query 15159 TTTTACAAAAATTTGCAT 15176 || |||||||| ||||| Sbjct 24493182 CTTCACAAAAATCTGCAT 24493199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || ||||| || || ||||| || || | | | || || Sbjct 24493447 ACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGCAAGTGTGCGGCCATCCTCA 24493506 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | ||||| | ||| || || || || ||||||||||| | Sbjct 24493507 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 24493566 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| | || || || || | | ||||| || || |||||||| || Sbjct 24493567 ATTTTGGCCTTGACATTGTCAATCGTGTCCGAACTCTCTACCTCCAAAGTAATGGTCTTC 24493626 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| || |||||||| ||||| Sbjct 24493627 CCTGTAAGAGTCTTCACAAAAATCTGCAT 24493655 >seq7 Length=27069033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || ||||| ||||| ||||| ||| | || | || || Sbjct 1828864 AACCAGATGAAGGGTTGACTCCTTTTGGATGTTATAATCAGCGAGGGTCCTTCCATCCTC 1828923 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | ||||| || ||||| || ||| || |||||||| || Sbjct 1828924 CAGCTGCTTCCCAGCAAAGATCAATCGTTGTTGATCTGGTGGGATACCTTCCTTATCTTG 1828983 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| || | || || ||||| |||| || || | ||| || || || Sbjct 1828984 AATCTTGGCTTTGACGTTATCGATTGTATCCGAGCTTTCGACTTCCAGGGTTATCGTCTT 1829043 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| || ||||| Sbjct 1829044 TCCGGTGAGGGTTTTTACAAAGATCTGCAT 1829073 >seq16 Length=28979753 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| || || || |||||||||||| | | | | || || | || Sbjct 1160446 ATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCCTCAAGCTG 1160505 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | |||||| ||||| |||||| |||||||| || |||||| Sbjct 1160506 CTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATCCCTTCCTTATCTTGAATTTT 1160565 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || | || || ||||| || |||| || || | || || || || || || Sbjct 1160566 GGCTTTGACGTTATCAATGGTATCACTGCTTTCGACCTCGAGAGTGATTGTCTTTCCAGT 1160625 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| Sbjct 1160626 GAGGGTCTTAACAAAAATCTGCAT 1160649 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| ||||||||||| | | | | | ||||| | ||| Sbjct 1159990 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCTTCCAGTTG 1160049 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| | ||| ||||| ||| ||||| ||||| || |||||| Sbjct 1160050 CTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGAATTTT 1160109 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || | || || || ||||| |||| || || |||||||| ||||| || || Sbjct 1160110 TGCCTTGACGTTATCAATGGTGTCGCTGCTTTCCACCTCCAAGGTAATAGTTTTCCCAGT 1160169 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || |||||| Sbjct 1160170 CAAGGTCTTAACGAAGATCTGCATA 1160194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383205811415