Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq10 102 7e-17 seq18 96.9 3e-15 seq16 95.1 1e-14 seq15 95.1 1e-14 seq2 93.3 4e-14 seq1 93.3 4e-14 seq17 91.5 1e-13 >seq7 Length=27069033 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 1828844 ATACCCCCACGAAGCCTCAGAACCAGATGAAGGGTTGACTCCTTTTGGATGTTATAATCA 1828903 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||| || || || || | ||||||||||| || || || Sbjct 1828904 GCGAGGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAATCGTTGTTGATCTGGT 1828963 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||||||||| || ||||| || | || | || || || || Sbjct 1828964 GGGATACCTTCCTTATCTTGAATCTTGGCTTTGA-CGTTATCGATTGTATCCGAGCTTTC 1829022 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | ||| || ||||| || ||||||||||| || ||||| Sbjct 1829023 GACTTCCAGGGTTATCGTCTTTCCGGTGAGGGTTTTTACAAAGATCTGCAT 1829073 >seq10 Length=26335333 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || |||||||| || |||||||| ||| | |||| ||| || Sbjct 23443023 ACAAGATGCAGAGTGGATTCCTTCTGTATATTATAGTCGGCAAGGGTTCGGCCATCCTCA 23443082 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | |||| | |||||||| || ||||||||||| || || || Sbjct 23443083 AGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 23443142 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | |||||||||| || || || | || | ||| ||| Sbjct 23443143 ATCTTGGCTTTAACATTATCGATGGTGTCGGAACTTTCCACCTCCAAGGTTATCGTCTTG 23443202 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || || || ||||| Sbjct 23443203 CCGGTAAGAGTCTTGACGAAGATCTGCAT 23443231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || || ||||| || |||||||| || | ||| | ||| || Sbjct 23443251 ACAAGATGCAGTGTCGACTCCTTCTGAATATTATAGTCAGCAAGGGTCCGACCATCCTCA 23443310 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | |||| | |||||||| || || || |||||||||||||| Sbjct 23443311 AGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCTTTATCTTGG 23443370 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | ||||| || ||| || || ||||||| || || Sbjct 23443371 ATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATAGTCTTT 23443430 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || ||||| ||||| || ||||| ||| || Sbjct 23443431 CCGGTGAGGGTTTTAACAAAGATCTGCATGCCGCCAC 23443467 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| || || || || || ||||| |||||||||||||| Sbjct 23442321 CCACCGCGAAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATATTATAATCAGCA 23442380 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || ||||| || || || | |||| | ||||| || ||||| Sbjct 23442381 AGTGTACGCCCATCCTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCAGGCGGT 23442440 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || |||||| ||||| || | || || || ||||||| Sbjct 23442441 ATCCCTTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATAGTATCCGAGCTCTCGACT 23442500 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || ||||| | || || |||||||| ||||| Sbjct 23442501 TCTAGAGTGATTGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 23442547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || |||||||| || || || ||||| || ||| | ||| ||| Sbjct 23442795 ACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCGAGGGTCCTCCCATCCTCC 23442854 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| || |||||||| || ||||||||||| || || || Sbjct 23442855 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 23442914 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | |||||||| || || || || || | || ||| Sbjct 23442915 ATCTTGGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAACCTCTAGGGTTATGGTCTTG 23442974 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| || || || ||||| Sbjct 23442975 CCGGTCAGGGTTTTGACGAAGATCTGCAT 23443003 >seq18 Length=25231592 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 8340449 TTCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGGATGTTGTAATCAG 8340508 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | |||| | ||| ||||||||||| || || | || |||| ||||| || || | Sbjct 8340509 CAAGGGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGAG 8340568 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 |||||||||| || || |||| Sbjct 8340569 GAATGCCTTCCTTGTCCTGAA 8340589 >seq16 Length=28979753 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || ||||||| ||| ||||| || || ||||||||||| || || ||||| Sbjct 1159964 ATTCCTCCACGAAGCCTCAGCACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCA 1160023 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| ||| ||||| ||| | |||| | |||||||| || Sbjct 1160024 GCCAAAGTGCGGCCATCTTCCAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGT 1160083 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || ||||| ||||||||| |||| || | || | ||||||| || Sbjct 1160084 GGGATTCCCTCCTTATCCTGAATTTTTGCCTTGA-CGTTATCAATGGTGTCGCTGCTTTC 1160142 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || | || || || || || ||||| Sbjct 1160143 CACCTCCAAGGTAATAGTTTTCCCAGTCAAGGTCTTAACGAAGATCTGCAT 1160193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| ||||| || |||||| Sbjct 1160420 ATACCACCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCG 1160479 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || |||||||| || Sbjct 1160480 GCCAAGGTACGGCCATCCTCAAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGT 1160539 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| |||||||||||||| ||||| || | || | ||| || || Sbjct 1160540 GGAATCCCTTCCTTATCTTGAATTTTGGCTTTGA-CGTTATCAATGGTATCACTGCTTTC 1160598 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | || || || || || || || |||||||| |||||| Sbjct 1160599 GACCTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATC 1160650 >seq15 Length=26192760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||||| | ||| ||||| | |||||||| || |||||||| ||||| Sbjct 17285893 ATTCCTCCCCTAAGCCTTAGCACGAGATGGATGGTTGATTCTTTCTGGATATTGTAATCA 17285834 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | | ||||| ||| | ||||||| ||||||||||| Sbjct 17285833 GCCAAGGTTCGGCCATCTTCAAGCTACTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGT 17285774 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || |||| || | ||| ||| ||| Sbjct 17285773 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCA 17285714 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || || ||||| || |||| || || || ||||| Sbjct 17285713 ACCTCGAGAGTAATGGTCTTTCCGGTCAGGATTTTCACGAATATCTGCAT 17285664 >seq2 Length=32417782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || || || || || || ||||||||||| || ||||| Sbjct 15025497 TTCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAG 15025556 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| || ||| |||||||||||||| || | |||| || || || || || | Sbjct 15025557 CCAATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGAG 15025616 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 |||||||||| || || |||| Sbjct 15025617 GAATGCCTTCCTTGTCCTGAA 15025637 >seq1 Length=34959721 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| || || || ||||| || || || || ||| | ||| || Sbjct 31554298 CAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTCCGGCCGTC 31554357 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | ||||||||| ||| | || | || ||||||||||| |||||||| || || || Sbjct 31554358 TTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTC 31554417 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||| || || || | || | ||||| |||||||| || || ||||| | || Sbjct 31554418 TTGGATCTTGGCCTTCACATTGTCGATAGTGTCCGAAGACTCTACCTCTAGAGTTATGGT 31554477 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| ||||| || || || |||||| Sbjct 31554478 CTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 31554511 >seq17 Length=27373735 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||||||||| || ||||| Sbjct 16111873 ATGCCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCA 16111814 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| ||||| || | || | || |||||||| || Sbjct 16111813 GCCAAGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCTGGT 16111754 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||||||||| || ||||| ||||| || | || | ||||||| ||| Sbjct 16111753 GGGATACCTTCTTTATCCTGGATTTTGGCTTTGA-CGTTGTCGATGGTGTCGCTGCTCTC 16111695 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | ||||| ||||| || || || || || || |||||| Sbjct 16111694 GACCTCGAGAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAGATCTGCATC 16111643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991792569240