Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1998 251 9e-62 seq287 149 8e-31 seq151 143 3e-29 seq14 111 2e-19 seq11 102 1e-16 seq3 93.3 5e-14 >seq1998 Length=1172 Score = 251 bits (278), Expect = 9e-62 Identities = 319/436 (73%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 8086 ATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCA 8145 ||||| | ||| ||||||| || || ||||| ||||| || ||||| ||| ||||| Sbjct 1 ATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 60 Query 8146 GGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACC 8205 || |||||||| |||||| || |||||||||||||||||||||||| | | ||| Sbjct 61 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 120 Query 8206 GATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAG 8265 | | |||||| | | || || | ||||||| || ||||| | ||| ||||||| Sbjct 121 AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAAC 180 Query 8266 AGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAAC 8325 ||| || |||||||| || || || || || | ||| ||||| ||||| ||||| || Sbjct 181 AGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAAT 240 Query 8326 AGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCC 8385 |||||||| || || ||||| ||||| | || || |||| || |||||||| || || Sbjct 241 GGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 300 Query 8386 GTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGA 8444 ||||| || || ||||| ||||| | |||||||| || || ||| | || || | | Sbjct 301 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCA 359 Query 8445 GCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGG 8504 | ||||| ||||||| ||||| ||||| || | || ||||| || | ||| || Sbjct 360 ATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGG 419 Query 8505 TTACCCAGTTACAGAA 8520 ||| |||||||||||| Sbjct 420 TTATCCAGTTACAGAA 435 >seq287 Length=58314 Score = 149 bits (164), Expect = 8e-31 Identities = 359/538 (67%), Gaps = 14/538 (3%) Strand=Plus/Plus Query 7658 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAAC 7717 |||||||| | ||| | || ||| | || | ||| |||||| | | | | ||| ||| Sbjct 17581 TGGTTGAAATCAAAATCATTTAGGCTAAAAGACATAATGCTAATATCTAAAATAGTAAAC 17640 Query 7718 CAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 7777 | || || || | ||||| || | ||||| || || | ||| | ||||||||||| Sbjct 17641 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTGAAA 17700 Query 7778 GAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTC 7837 | ||||||||| ||| || ||||| || || |||||||| | ||| || || || Sbjct 17701 TA----TATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAGTT 17756 Query 7838 TCTTCTTCTTGACC-GAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACG 7896 | ||| |||| | | ||| | |||| | || ||| | | | |||||||| Sbjct 17757 TTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTCCTT 17816 Query 7897 AACCAGAGAAGAGGTTA-CAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955 | || | |||||||| |||| |||| |||||| |||||||| | |||| | Sbjct 17817 TATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCACTGAATA-AGAAGTTGGTGTAA 17874 Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015 ||||| ||||| || ||||| || |||||||||||||| | | ||| | Sbjct 17875 TT------ACGCCTGATATGTGAAATGGGTGTATAAGGATGTTGTGCTCAGTCTAGAATA 17928 Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075 ||| | | ||||||| || || || | || ||||||||| | ||| ||| | || | Sbjct 17929 CAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATAAGAAAAACATCCCT 17988 Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135 || | ||||||| | ||| ||| | | | ||||| |||| || ||||| | Sbjct 17989 AGCCAATTGGATAGATCAAGAAAACAATAATAGTAGTTGCAACACGAGCTGAATATGCAA 18048 Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 || | ||||| |||| ||||| || | || ||||| |||||||| ||| ||||| Sbjct 18049 CAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCCACTCACCACCTATGTA 18106 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 7955 ACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAG 8014 |||||| ||||| | ||||| || |||||||| |||||||||||||| || | ||| Sbjct 44416 ACACCAATTACGCCTAATATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAAT 44475 Query 8015 ACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCT 8074 |||| || ||||||| || | || | || || ||||| | ||| || || Sbjct 44476 ACAATTATAAAGTTGAAAATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCC 44535 Query 8075 TGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCT 8134 | ||| | ||||||| | ||| || | || | ||||| |||| || ||||| Sbjct 44536 TAACCAATTGGATAGATCAAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCA 44595 Query 8135 ACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| | ||||| |||| ||||| ||| || || |||||||||||||||||||||||| Sbjct 44596 ACAAAAATCCAAGGACACATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTA 44654 >seq151 Length=113734 Score = 143 bits (158), Expect = 3e-29 Identities = 358/539 (66%), Gaps = 15/539 (3%) Strand=Plus/Plus Query 7658 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAAC 7717 |||||||| || ||| | || ||||| || | ||| |||||| | | | | ||| ||| Sbjct 4332 TGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCGAAAATAGTAAAC 4391 Query 7718 CAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 7777 | || || || | ||||| || | ||||| || || | ||| | ||||||||||| Sbjct 4392 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTGAAA 4451 Query 7778 GAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTC 7837 | |||||||| ||| || ||||| || || |||||||| | ||| || || || Sbjct 4452 TAC----ATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAGTT 4507 Query 7838 TCTT--CTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895 | || || || || ||| | |||| | || ||| | | | |||||||| Sbjct 4508 TTTTTCCTCTTTAACTGAATCTGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTCCT 4567 Query 7896 GAACCAGAGAAGAGGTTA-CAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAG 7954 | || | |||||||| |||| |||| |||||| ||| |||| | |||| Sbjct 4568 TTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCATTGAATA-AGAAGTTGTTGTA 4625 Query 7955 ACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAG 8014 | ||||| | ||||| || ||||| | ||||||||||||| | | ||| Sbjct 4626 ATT------ACGCCTAATATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAGAAT 4679 Query 8015 ACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCT 8074 |||| ||| ||||||| ||||| | | || ||||||||| | ||| ||| || Sbjct 4680 ACAATCATAAAGTTGAAAATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTTCCC 4739 Query 8075 TGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCT 8134 | ||| | ||||||| | ||| ||| | ||| | ||||| |||| || ||||| Sbjct 4740 TAACCAATTGGATAGATCAAGAAAACAATAATTGCAGTTGCAACACGAGCTGAATATGCA 4799 Query 8135 ACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| | ||||| |||| ||||| | | || ||||| ||||||| ||| ||||| Sbjct 4800 ACAAAAATCCAAGGACACATACTCGGTCAAAAATTAAGTTGCCACTCATCACCTATGTA 4858 >seq14 Length=24855542 Score = 111 bits (122), Expect = 2e-19 Identities = 178/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 6356 AATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCT 6415 || || || || || | ||||| ||||| || || ||||| || ||||| | ||| | Sbjct 951955 AAGAGAATATTTTTAATGTAGAAAGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTC 952014 Query 6416 TGTGAAACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAG 6475 || ||||| |||||||| || | | || || | ||||| | | ||| | |||| Sbjct 952015 TGAGAAACGAAGTCATAGGCACGTAAATTTAGAGTCAGACCGA-----CTAATCCGAGAG 952069 Query 6476 G-----TCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTAT 6530 |||| | |||| | || || ||||| | |||||||||||||| |||| | |||| Sbjct 952070 CGCTCATCCATAAACCCGTTACTGGTACAAATAACATAAAGAAATGTAACCAATGTTTAT 952129 Query 6531 TGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGG 6590 | || || | |||||||| ||| || | || || ||||| |||||||| ||||| | Sbjct 952130 CGGAAAAAGCAACCCCAAAGATTTGAAACTAAAAGCGGTTAGCGGTGACCATTGAATAAG 952189 Query 6591 TCTCCTCTTCTTGTGT 6606 | || || |||| || Sbjct 952190 TTTCTTCAGCTTGAGT 952205 >seq11 Length=27369018 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 |||| |||||||| |||| |||| | | || |||||||| || || |||||||| Sbjct 27029780 TCAGCAAAGTTCACCCTCCTTGTGCGTGTGAATAACACAATCTGAAGTTGGGTAAGAAAC 27029721 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||| ||||| || |||| | || || || | ||||| ||||| || ||| ||| Sbjct 27029720 ACAAGTCAGCAGATAACCCCCCTCCATTTGATTCTCATCCAGGAAGGAACCATCAGATTG 27029661 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 ||| || | || || | | || || |||||| | || || || ||||| | ||| || Sbjct 27029660 ATCAACTGAGCCTGACACCATCTTCCCAGCACAAGTAGAGCAAGCTCCAGCCCTGCAAGA 27029601 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436 |||| || |||| ||||| | ||||| ||||| || |||||| ||| || Sbjct 27029600 GTAGGGTAGCTCAACTCCTGCATTCTCAGCCGCATCTAGGATGTACGTATCATC 27029547 >seq3 Length=29412403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 257/393 (65%), Gaps = 26/393 (7%) Strand=Plus/Minus Query 7955 ACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAG 8014 |||| ||| ||||| | ||||| || |||| || ||||||||||| | |||| ||| Sbjct 11375566 ACACTAGCTACGCCTAATATGTGAAATGGGTAAATAAGGATGTTGTGATTAGCTTAGAAT 11375507 Query 8015 ACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCT 8074 | | ||| ||||||| | || |||||| | |||||||| | | || |||| || Sbjct 11375506 GCGATCATAAAGTTGAATGCACTAGAGATTTCGGGAGGCATAACATTTGA-AAAGCTTCT 11375448 Query 8075 -TGACCGAAAGGATAGA-CGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATG 8132 ||| | | ||||||| | | | ||||||| | |||| || | || |||| Sbjct 11375447 CTGATCAATTGGATAGATCAATAACAACAGCAG----TAGTGCAATAGGTACTGAATATG 11375392 Query 8133 CTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAG--TTCCCACTCACGACCCAT 8190 | ||| ||||| ||| ||||| |||||| || | | |||||||| |||||||| Sbjct 11375391 CAACAACAATCCAAGGAAGCATAACTAGACAAAAACTAGGTTTTCCCACTTGCGACCCAT 11375332 Query 8191 GTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTA 8250 || | |||||| | | || || | ||| | ||| ||||| Sbjct 11375331 GT-----------------AAGAAGTGTAGAACAATTAGCTCATAAGCATCACAATTGTA 11375289 Query 8251 GAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTT 8310 | | | ||||||| ||| || ||||||| || ||||| | || | || |||| | Sbjct 11375288 TAACTATTCATCAATAGATGCCACTTCCCATATTGGATAACAATGCAAACATATAGTCGT 11375229 Query 8311 AGAAGAAGGAACAACAGCACCAGAGATGATGTT 8343 ||||| ||||| || |||| ||| | ||||| Sbjct 11375228 AGAAGTAGGAATAATGGCACTAGAAAAAATGTT 11375196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622109099125360