Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17 87.8 2e-12 >seq17 Length=27373735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 302/463 (65%), Gaps = 11/463 (2%) Strand=Plus/Plus Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || |||||||| ||||||||||| | ||| || || || || || |||||||| || Sbjct 24448038 CCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAAT 24448097 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATC 127695 |||||||||||||| || || || | || | ||| || |||| | | || ||| Sbjct 24448098 ATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGAAC----CATC 24448153 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 || |||| | | ||||||| |||||||| | | ||| || ||||| | ||| || | Sbjct 24448154 AATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATG 24448213 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATG 127814 ||| | ||||| || |||| |||||||| || | || | | || | | Sbjct 24448214 AAACAAACGATTCTTCTC-ATTGGAGTCTTTGATATAAGTCTCCA--ACAAAAGACTGTA 24448270 Query 127815 TTTCGCCGTG-GACCATT-TCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 127872 || | | | || ||| ||| || | || | | || |||| || || || Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGC 24448330 Query 127873 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 127932 || ||| || || | |||| | | || ||| |||| ||| || ||||| || | Sbjct 24448331 TACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGC 24448390 Query 127933 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCA 127992 |||||| || || || | || | || || | || |||| | ||||| | ||| Sbjct 24448391 AGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCA 24448450 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 | | |||||| | |||||||| |||||||| ||||||||| Sbjct 24448451 ATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAA 24448493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491716612040