Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17 120 5e-22 >seq17 Length=27373735 Score = 120 bits (132), Expect = 5e-22 Identities = 344/524 (66%), Gaps = 14/524 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | || || || | ||||| | | || |||| Sbjct 24447706 TCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAGATCAACTCCATCCAATCAAAAGGGT 24447765 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | ||| | || |||| |||| || || ||| |||||| || ||||| || | Sbjct 24447766 TAGCCACATTGTATATCTTCCCGCATCCAAGTGCATCCAACAACCTATCAGCCACGAACT 24447825 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | ||||| | |||| | || | ||| ||||| | || | | ||| ||||| || Sbjct 24447826 CAATGTACTGGCTCATCAGTTCCCCGTTCATCCCTACCAACGCACAGGGAAGCGCGTCGC 24447885 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||| ||| ||||||| || || || || ||| ||| | ||||| || | | Sbjct 24447886 ACACAAATTCCCTCTCAATATCCACTGCGTCTCGCACTATCCCCTTCACACGCTCCTCGC 24447945 Query 159888 CCGGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||| | ||| | |||| || | | | ||||| || |||||||||| | Sbjct 24447946 TCAACTTCTTCCTCAACA----GTCCGTATA--GCAAACACGCGAAATCGCAGTGCAAGC 24447999 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || |||||||| |||||||| || | | | || ||||||| || ||| | Sbjct 24448000 CTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAATCCAGGCATGAGTCCCCGCTTCT 24448059 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || || ||| |||| | | ||||| ||||||||||| ||||| Sbjct 24448060 TTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAAAAATATCCCCTCCACACAGGCAAAA 24448118 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || | ||||||||| | ||| | | | ||| ||||||| ||||| ||| Sbjct 24448119 GCGATCAGCCTCTCAGCGAAA---GTCTCCGAACCATCAATCCACCTGAGAGCCCACTCA 24448175 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAA 160167 ||||| || || | || || | | |||| ||| | |||||| Sbjct 24448176 GCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATGAAACAA 24448219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795135132270640