Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 seq11 102 9e-17 seq16 98.7 1e-15 seq10 93.3 5e-14 seq7 89.7 6e-13 seq4 89.7 6e-13 >seq1 Length=34959721 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || |||||||||||||| | || |||||| || || |||||||||| Sbjct 31554284 CCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCA 31554343 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || || || || || ||||| || | |||||||||||| | || Sbjct 31554344 AGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGA 31554403 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | | | | ||||| || || || Sbjct 31554404 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATAGTGTCCGAAGACTCTACC 31554463 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 31554464 TCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 31554513 >seq11 Length=27369018 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| |||||||||||||| | || || || | || || Sbjct 5723433 CACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGCAAGTGTACGGCCATCCTC 5723374 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| ||||| || ||||| | ||||||||| | || | | |||||| ||| Sbjct 5723373 CAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTG 5723314 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||||| | | | || || ||| |||||| |||| || || || Sbjct 5723313 AATCTTGGCCTTGACATTATCAATAGTATCAGAGCT---TTCCACTTCCAAAGTAATTGT 5723257 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||| |||||||||||||| Sbjct 5723256 CTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 5723224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | || | ||||| ||| | || ||||||||| ||||||||||| | Sbjct 5723224 TGCCTCCACGAAGGCGGAGCACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAG 5723165 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||| || || || |||| | ||||||||| | | Sbjct 5723164 CAAGGGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTG 5723105 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || |||||| |||||| ||| | | | | ||||| ||||| Sbjct 5723104 GAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCA 5723045 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 5723044 CCTCCAAAGTGATTGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| | || || || | || || |||||||| || || || Sbjct 5723643 CTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGGCCATCCTCCAGCTGCTTACCAGCAAA 5723584 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| ||||| ||||| | Sbjct 5723583 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 5723524 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||| |||| ||||| || ||||| || || || || || Sbjct 5723523 GTCAATAGTGTCGGAGCTTTCCACTTCCAATGTGATTGTCTTGCCAGTGAGGGTCTTCAC 5723464 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 5723463 AAAGATTTGCAT 5723452 >seq16 Length=28979753 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||| || || | ||| ||| ||||| ||||| || || | Sbjct 1160195 CCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGCC 1160254 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 1160255 AAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGA 1160314 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | ||||||||| ||||| ||||| ||| | | | |||||||| ||||| Sbjct 1160315 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGCTGCTCTCCAC 1160373 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || || ||||| |||| ||||| || ||||| ||||| Sbjct 1160374 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 1160421 >seq10 Length=26335333 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || || | || |||||||| || ||||| || || ||||| || | Sbjct 23442777 CCGCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCG 23442836 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | | || || |||||||| ||||| || |||| ||||||||||| | || Sbjct 23442837 AGGGTCCTCCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 23442896 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | | | | | | |||||| ||| || Sbjct 23442897 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAAC 23442955 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 23442956 CTCTAGGGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 23443003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| || || |||| || || | |||| || Sbjct 23442567 ACCAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCGGCAAGGGTCCTTCCGTCCTCT 23442626 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| |||| ||||||||||| | || | | ||||| || | Sbjct 23442627 AGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTGG 23442686 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | |||||| ||| || || | || ||||| ||| Sbjct 23442687 ATCTTGGCCTTCACGTTATCAATTGTGTCGGAGCTTTCAACCTCTAGTGTTATGGTCTTG 23442746 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || ||||| |||||||| |||||| Sbjct 23442747 CCGGTGAGAGTTTTGACAAAGATCTGCATT 23442776 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || || | || ||||||| ||| |||||| || ||||| ||||| | Sbjct 23443233 CCTCCCCTCAACCGGAGAACAAGATGCAGTGTCGACTCCTTCTGAATATTATAGTCAGCA 23443292 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || ||||| |||||||| |||| | ||||||||| | || Sbjct 23443293 AGGGTCCGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 23443352 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | || || || |||||| ||||| | | | ||||| |||| || Sbjct 23443353 ATCCCTTCTTTATCTTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTC---TCA 23443409 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || || || || || || || |||||||||||||| ||||| Sbjct 23443410 ACCTCAAGAGTAATAGTCTTTCCGGTGAGGGTTTTAACAAAGATCTGCAT 23443459 >seq7 Length=27069033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| || ||||| | || || || |||| || Sbjct 1829549 ACAAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGCCAGGGTACGGCCGTCTTCA 1829608 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| ||||| | ||| ||||||| || | | |||||| || Sbjct 1829609 AGCTGCTTGCCGGCGAAGATCAACCTCTGTTGGTCGGGGGGAATTCCCTCCTTATCTTGA 1829668 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||||| | | | || || |||| || || || | || ||||| Sbjct 1829669 ATCTTGGCCTTGACATTATCGATTGTATCGGAGCTC---TCGACCTCGAGAGTTATGGTC 1829725 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| || || || || || ||||| ||||| ||| Sbjct 1829726 TTGCCTGTGAGGGTCTTGACGAAGATCTGCATATTG 1829761 >seq4 Length=28735499 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | || | |||||| || | || ||| || |||||||||||||| | Sbjct 24493883 TGCCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTG 24493942 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||| || || || ||||| | ||||||||| | | Sbjct 24493943 CAAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTG 24494002 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | ||| |||||| ||| || ||| | | | | | | ||||| ||| | Sbjct 24494003 GAATTCCCTCTTTGTCCTGGAT-TTTAGCTTTAACATTGTCAATGGTGTCTGAGCT---T 24494058 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 24494059 TCCACCTCCAGGGTGATTGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 24494111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224134795880