Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 seq16 91.5 1e-13 seq5 87.8 1e-12 seq4 87.8 1e-12 seq11 86.0 4e-12 seq7 82.4 5e-11 >seq10 Length=26335333 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||||||||| || | ||||| |||| ||| || ||||||||||| ||||| Sbjct 23443005 CCTCCCCTCAAACGCAGAACAAGATGCAGAGTGGATTCCTTCTGTATATTATAGTCGGCA 23443064 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||| || ||| | || || | | |||||| || | || Sbjct 23443065 AGGGTTCGGCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 23443124 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || || ||||| | | | ||||| | |||||||| Sbjct 23443125 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTATCGATGGTGTCGGAACTTTCCACC 23443184 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | ||| || |||||||||||||| Sbjct 23443185 TCCAAGGTTATCGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 23443231 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | ||| || || || | |||||| ||| ||| || ||||| || ||||| || Sbjct 23442777 CCGCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCG 23442836 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| || || ||| |||| || | ||||||||| || | || Sbjct 23442837 AGGGTCCTCCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 23442896 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || ||||| | |||| | |||||| | |||||| | Sbjct 23442897 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGAT--TGTGTCGGAGCTTTCAA 23442954 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || || || || || | ||||| |||||||||||||| Sbjct 23442955 CCTCTAGGGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 23443003 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || || | ||| | ||| || || || || ||||||||||| Sbjct 23443460 GCCGCCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGC 23443519 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||||| ||| |||| || || | |||||||||| || Sbjct 23443520 CAAAGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGG 23443579 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || ||| | ||| | | | || || | ||| || | Sbjct 23443580 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGA-CGTTGTCGATGGTATCGGAGCTCTCGA 23443638 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| || || || || | ||||| ||||| |||||||| Sbjct 23443639 CCTCGAGAGTAATGGTCTTGCCGGTGAGGGTTTTAACGAAAATCTGCAT 23443687 >seq16 Length=28979753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 ||| || | ||| | |||| ||| ||||| || || ||||| |||||| ||| |||| Sbjct 1159981 CAGCACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATC 1160040 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 |||| ||| || ||| | || || | | |||||| || | || | || || || || Sbjct 1160041 TTCCAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTATC 1160100 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 |||||| || | | | | ||||| ||||||||| ||||| ||||| || Sbjct 1160101 CTGAATTTTTGCCTTGACGTTATCAATGGTGTCGCTGCTTTCCACCTCCAAGGTAATAGT 1160160 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || || || || |||||||||||||| Sbjct 1160161 TTTCCCAGTCAAGGTCTTAACGAAGATCTGCAT 1160193 >seq5 Length=28438989 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||||||||| ||||| || | ||| || || || || || || || || Sbjct 727731 CCACCCCTCAAACGCAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAGTCTGCA 727672 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| |||||| || | || || | ||||||||||||| || Sbjct 727671 AGGGTCCGTCCATCTTCCAGTTGTTTTCCTGCGAAGATGAGGCGCTGCTGATCCGGTGGG 727612 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| || || |||| | |||| || ||||| | | ||| | Sbjct 727611 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATA--GTGTCCGAGGATTCTA 727554 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || |||||||||| ||||| |||||||||||||| Sbjct 727553 CCTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 727505 >seq4 Length=28735499 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | || || |||| || | ||| ||||| || ||||| || || || Sbjct 24493884 GCCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGC 24493943 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| |||| || | || || || |||| || || | |||||| || | || Sbjct 24493944 AAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 24494003 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| ||||| | | | ||||||| ||||||||| Sbjct 24494004 AATTCCCTCTTTGTCCTGGATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTTTCCAC 24494063 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || ||||| || || |||| ||||| |||||||||||||| Sbjct 24494064 CTCCAGGGTGATTGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 24494111 >seq11 Length=27369018 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||| | ||| || ||||| ||||| || || || Sbjct 5723223 GCCTCCACGAAGGCGGAGCACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGC 5723164 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| |||| || | || || || |||| || | | |||||| || | || Sbjct 5723163 AAGGGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGG 5723104 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||||| || || |||| || ||| | ||||||| |||||| Sbjct 5723103 AATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTGTCAATG--GTGTCTGAACTTTCC 5723046 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| ||||| || || || | ||||||||| ||||||||||| Sbjct 5723045 ACCTCCAAAGTGATTGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 >seq7 Length=27069033 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| || || |||| ||||| ||| |||||| || ||||| || || || Sbjct 1829303 CCTCCCCTCAATCGGAGAACCAGATGCAGAGTAGATTCTTTCTGAATATTGTAGTCAGCT 1829362 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| |||||||| || ||| |||| || | | |||||| || | || Sbjct 1829363 AAGGTCCTTCCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 1829422 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || || |||| ||| | | | |||||| | ||| || || Sbjct 1829423 ATCCCTTCCTTATCTTGGATCTTGGCCTTAA-CGTTGTCAATTGTGTCAGAGCTCTCGAC 1829481 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || | ||| || || |||||||||||| Sbjct 1829482 CTCAAGAGTTATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATG 1829530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361052428227