Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq5 82.4 9e-11 >seq2 Length=32417782 Score = 187 bits (206), Expect = 3e-42 Identities = 299/424 (71%), Gaps = 14/424 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| ||||| || | | ||| ||||| || ||||||| ||||| || |||| || Sbjct 6732400 ATCTAGGATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGT---GTTACCCTC 6732456 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| ||||||||||||||||||| || ||||| | ||||||||| || Sbjct 6732457 AAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT-- 6732514 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | |||| |||| || |||||||| ||||| | || || || Sbjct 6732515 -CCACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAAT 6732573 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 ||| || |||||| || || |||||||| || || | ||| || ||||| Sbjct 6732574 GCAAGGAGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACC 6732633 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | | || | || || || ||| || ||||| Sbjct 6732634 AACAAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCAC 6732692 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||||||| ||| ||||||||||| || || ||||| ||| | || ||| ||| Sbjct 6732693 CGGCAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACAC 6732752 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || |||||| || ||| | || | ||||||| || | ||| ||||| || |||| Sbjct 6732753 CTTTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAA 6732812 Query 16330 TCTC 16333 ||| Sbjct 6732813 CCTC 6732816 >seq5 Length=28438989 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| | ||| |||||||| || || | |||||||| | Sbjct 18038549 AAATCCATCCATTTCAGTCAACAACTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 18038608 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| ||||||||||||||||||||||||| || || ||||| Sbjct 18038609 TCCAAGACCAGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATAAATACAATGCA 18038668 Query 16094 TGG 16096 || Sbjct 18038669 CGG 18038671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620726734013680