Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 194 2e-44 seq17 93.3 5e-14 >seq2 Length=32417782 Score = 194 bits (214), Expect = 2e-44 Identities = 298/421 (71%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| ||||| || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 6732400 ATCTAGGATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 6732459 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 6732460 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 6732516 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | |||| |||| || |||||||| ||||| | || ||||| || Sbjct 6732517 ACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAATGCA 6732576 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || |||||| ||| ||| |||||||| || || || ||| || |||||||| Sbjct 6732577 AGGAGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAAC 6732636 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 6732637 AAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCGG 6732695 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 ||||||| ||| ||||||||||| || || ||||| ||| | || ||| |||| Sbjct 6732696 CAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACCTT 6732755 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 |||||| || ||| | || | ||||||| || | ||||||||| || |||| || Sbjct 6732756 TTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCT 6732815 Query 9640 C 9640 | Sbjct 6732816 C 6732816 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 107236 || || ||||||||||| || || || ||||| || |||||| | || |||||| | Sbjct 14720165 GGGGTTCCAGCATTGAAAAGAGTAGGGGTTGCATGTATGAACCAGCGCTGAGACATCAAG 14720106 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | |||||| | | |||| |||||||| || ||| || |||| || || | ||| Sbjct 14720105 TGGTATGTTTTGACAGCAGAGTCAATGTCCTCTTTGTGAATACCGACAGCAACCCTCATC 14720046 Query 107297 AACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCA 107356 ||||||| || ||| |||||| | | ||||| | | | ||| ||| | ||||| Sbjct 14720045 AACATGTGCTGTGGTCTTTCCACAATTTTCCCATCAACCTTTAAAAGGTAGGACCTCTCA 14719986 Query 107357 AGGGTTTTGAGACCAAAGTAACCAAAATCA 107386 || ||||||| ||||||||| || | ||| Sbjct 14719985 AGAGTTTTGAAGCCAAAGTAATCATAGTCA 14719956 >seq17 Length=27373735 Score = 93.3 bits (102), Expect = 5e-14 Identities = 322/500 (64%), Gaps = 7/500 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || |||||||| || || | || ||||| || || || |||||||| ||||||||| Sbjct 24447999 CCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAATCCAGGCATGAGTCCCCGCTTC 24448058 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || |||||||| || ||||| || || ||||||||||| ||||| Sbjct 24448059 TTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAATATCCCCTCCACACAGGCAAAA 24448118 Query 117412 GCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATTGCCCATT 117469 || | || | ||| ||||| | ||| || |||| ||| | | ||||| | Sbjct 24448119 GCGATCAGCCTCTCAGCGAAAGTCTCCGA-AC----CATCAATCCACCTGAGAGCCCACT 24448173 Query 117470 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAG 117529 ||||| || | | ||| || || || | |||||| | ||| || | ||||| ||| Sbjct 24448174 CAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATGAAACAAACGATTCTTCTCAT 24448233 Query 117530 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 117589 || || || || | || | ||| || | || |||| | ||| Sbjct 24448234 TGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACATCTCAGAGTGAATATTCTCAA 24448293 Query 117590 TATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAAT 117649 || | ||| || | || || | || || || || ||| ||||| | | |||| Sbjct 24448294 TAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTACCTGAACTTCCTTCATAAAAC 24448353 Query 117650 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 117709 | | || ||| |||| ||| || ||||| || |||||||||| || || | | Sbjct 24448354 GGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAGCAAAGAAGGCAAGAACATGGG 24448413 Query 117710 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 117769 | || || | ||| |||| | | ||||| | ||| | | ||||||| || | || Sbjct 24448414 TGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAATGGCGGAGATCTTGAGAGAGAT 24448473 Query 117770 CAACTTCTTCCGCAGTCCAA 117789 | || || || ||||||||| Sbjct 24448474 CGACCTCCTCGGCAGTCCAA 24448493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965910359560