Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1998 224 1e-53 seq14 163 3e-35 seq287 98.7 1e-15 seq1 87.8 2e-12 seq920 82.4 9e-11 seq10 82.4 9e-11 >seq1998 Length=1172 Score = 224 bits (248), Expect = 1e-53 Identities = 315/437 (72%), Gaps = 4/437 (1%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 ||||| | ||| ||||| || | ||||| || || | || ||||| || ||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || ||| | ||| | |||||| |||| || || |||| ||||| ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 || || |||||||| || ||||| |||| || || ||| | || || || || || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| ||||| |||| || ||| | || || || ||||||| | || | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | |||||| | |||| | | |||||||||||||||||||||||| || || Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 180107 CTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 180165 ||||||||||||| ||||| ||| || |||||||| ||||| || || || || ||| Sbjct 76 TCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 180166 CTGTATTCCTCGTCTAT 180182 |||| ||| | ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 163 bits (180), Expect = 3e-35 Identities = 189/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 182093 ACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTC 182152 ||||||| |||||||| ||||||||||| || || |||||||| | || ||| ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 182153 GGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 182212 || |||| ||| | |||| ||||| |||||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 182213 GGTCTTTGGACAAGTTCCATCGGTATTA-TTGGTCTTGCTCTCAACCTTCGTGCTTATGA 182271 ||| | |||| || | |||| |||| | ||||| |||| || | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 182272 CTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAA 182331 ||| || || || ||||| | ||| ||||||| || || || ||||| ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 182332 GAACATTCTCTT 182343 || |||||||| Sbjct 951966 AAATATTCTCTT 951955 >seq287 Length=58314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTA 180134 |||||||||||||||||||||||| || ||| | ||||| | || ||||| | || Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 180135 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 180194 |||||||| |||| || || | || | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 180195 GGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTT 180254 || || ||| | |||||||| || | | | | ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 180255 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGT 180313 ||| | || |||||||||||||| |||||||| || ||||| | || ||| ||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 >seq1 Length=34959721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 4757637 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 4757578 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 4757577 CCTACTTGGGGAG 4757565 >seq920 Length=13384 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||| ||| ||| Sbjct 3786 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGATTCGAAT 3845 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 3846 CCTACTTGGGGAG 3858 >seq10 Length=26335333 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 171903 TATCTTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGT 171962 ||| |||| ||||| || ||||| || ||||| ||||| || ||| | || ||| Sbjct 23499978 TATATTCTTGACGCATTTGAAGAAGCTGGTATTGATCTGCCATACTCATGCAGGGCAGGT 23500037 Query 171963 GCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGA-GCAATC 172021 | || || |||||| || ||| ||| | || || |||| ||||| || | | | Sbjct 23500038 TCTTGCTCTTCCTGTGCAGGGAAAATTGTAGGAGGAACTCTAGACCAGTCTGATGGGAGC 23500097 Query 172022 TTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 || |||||| ||||| || ||||| || || | ||||| || ||||||||||| ||| | Sbjct 23500098 TT-CCTTGAAGATGACCAGATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCTTACCCT-C 23500155 Query 172082 AAGC-GATTGTGT 172093 | | |||||||| Sbjct 23500156 AGTCTGATTGTGT 23500168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610381395110760