Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1998 176 5e-39 seq16 105 8e-18 seq287 93.3 5e-14 seq151 93.3 5e-14 seq560 91.5 2e-13 seq14 89.7 6e-13 >seq1998 Length=1172 Score = 176 bits (194), Expect = 5e-39 Identities = 274/389 (70%), Gaps = 2/389 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || ||| | || ||| | | ||| || || Sbjct 395 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATT 337 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| || ||||| || ||||| || || || | ||||| || | || Sbjct 336 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 277 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| ||||| || || |||||||| || |||| | || ||||| Sbjct 276 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATA 217 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || |||||||| |||||||| ||| |||||||||||||||| || ||||| Sbjct 216 GGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGC 157 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| || | | | | |||||| | ||||| | | |||||||| | Sbjct 156 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 97 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || ||||| |||||||| ||||||||| || || Sbjct 96 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 37 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTT 169829 || || | ||||| ||||| ||||| Sbjct 36 CCTGTTGCAGCTGCTACTGCTGTTTTCTT 8 >seq16 Length=28979753 Score = 105 bits (116), Expect = 8e-18 Identities = 172/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 153237 CCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCC 153296 || ||||| || | ||||| | | |||||||| |||||||||| ||||| || Sbjct 23693506 CCACCAGTTATTTTGAGAAACATAATGGAGAATCCAGCTTGGTACACACAGTACACACCT 23693447 Query 153297 TATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATC 153356 ||||||||||||||||||||||| || ||||| | || | ||||| ||||| | || Sbjct 23693446 TATCAAGCTGAGATATCTCAGGGGAGGTTGGAGTCCTTGCTTAATTATCAAACCATGATT 23693387 Query 153357 ACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCA 153416 || || || || ||||| || || | || || || | | || |||| ||||| || Sbjct 23693386 ACGGATCTCACTGGATTGCCCATGTCGAATGCTTCATTGCTCGACGAAGGGACTGCTGCT 23693327 Query 153417 GCAGAAGCAAT-GCTATTAGC-ATATAATTCTACAAGAG-ATAAGAAGACTGTCATAGTT 153473 || || || || ||||| || ||| || ||| ||| | | || |||||| | || || Sbjct 23693326 GCTGAGGCTATGGCTATGTGCAATAATATCCTAAAAGGGAAGAAAAAGACTTTTATTATT 23693267 Query 153474 GATA 153477 | || Sbjct 23693266 GCTA 23693263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| || | || ||||||||| |||| ||||||||||||||||| ||| Sbjct 23692999 GATATTGTTGTTGGATCTGCTCAGAGGTTTGGTGTTCCCATGGGATATGGAGGTCCACAT 23692940 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 || ||||| || || || || | |||| ||||| ||| ||||| |||||| | | Sbjct 23692939 GCAGCATTTTTGGCTACCTCACAAGAGTACAAGAGGTTGATGCCTGGAAGAATTATTGGT 23692880 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || ||| | || || || | | || | || || || || | Sbjct 23692879 GTTAGT--GTTGATTCTTCTGGGAAGCCTGCTCTGCGCATGGCGATGCAAACCAGGGAAC 23692822 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCA 153970 ||||||| | || || || || || |||||||||||||| ||||| Sbjct 23692821 AGCATATTCGCAGGGATAAGGCTACAAGTAACATCTGCACTGCTCA 23692776 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || ||||| || | ||||||||||| || |||||||||||||| || Sbjct 23689820 TGGAGCTGATGTTTGCCATCTTAATCTCCATAAAACATTTTGCATTCCACATGGAGGCGG 23689761 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTTGTA 155129 ||||| ||| | |||||||| ||||| ||||| | |||||||| || Sbjct 23689760 TGGTCCAGGCATGGGTCCTATTGGTGTGAAGAAACACTTGGCACCATTTTTA 23689709 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 154879 TTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCG 154938 ||||||| || || || ||||| || | |||| ||| |||||||||||||| Sbjct 23690519 TTACATATCCTTCCACTCATGGAGTCTATGAAGAAGGTATTGATGAGATATGTAAGATCA 23690460 Query 154939 TTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGT 154993 ||||||||||||||||||| |||||| | ||||| || || | ||||| ||||| Sbjct 23690459 TTCATGACAATGGTGGTCAAGTATATATGGATGGGGCTAACATGAATGCTCAGGT 23690405 >seq287 Length=58314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 169729 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTT 169788 |||||||| | |||||||||| | || || | ||| |||||||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 169789 GCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAG 169848 ||||| || || | || | |||| | || ||||| | || ||| ||||| || Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 169849 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTT 169908 || || ||| || | ||||| ||||| | || || |||||||||||| | || Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 169909 TTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACAT 169949 ||| | || ||||| ||||| || ||||| || || ||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Score = 91.5 bits (100), Expect = 2e-13 Identities = 325/501 (65%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 169768 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTC 169827 ||| |||||||||| | ||||||||| || || | || | || | | ||| ||| Sbjct 18067 ATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTC 18008 Query 169828 TTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 169887 || | || ||| |||| |||| | || ||| || ||||||| ||||| | || | | Sbjct 18007 TTGATCTATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGAT 17948 Query 169888 ACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCAC 169947 | ||||||||||| | | || ||| | | ||||| ||||| || || || || || ||| Sbjct 17947 ATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTCAC 17888 Query 169948 ATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT--TTATTCTCAGCAATGCATGGTTCAC 170005 || |||| || ||| | | | | || |||||| || |||||| |||| | Sbjct 17887 ATATCAGGCGT------AAT-TAC--ACCAACTTCTTATTCAGTGCTATGCATCGTTC-C 17838 Query 170006 TTG-TTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTAT 170064 ||| | || || | | || | ||||| ||| | | | || || | |||| Sbjct 17837 TTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTAC 17778 Query 170065 AAGTTC-GGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCG 170123 | ||| | |||| ||| |||| || || || |||| || || ||||| ||||| || Sbjct 17777 ATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCG 17718 Query 170124 TCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGT 170183 | | |||||| || | ||||||||||| | |||| || ||||||| | Sbjct 17717 ATTGAACTTCCAATA----TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGC 17662 Query 170184 TTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTT 170243 || ||| | ||| || | | ||| || | | | ||| ||| ||| | || | | | Sbjct 17661 TTGGCCTATAGTAGGTATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAGCCT 17602 Query 170244 GAATGGTTTCAACTTTAACCA 170264 |||| ||| | || ||||| Sbjct 17601 AAATGATTTTGATTTCAACCA 17581 >seq151 Length=113734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 327/502 (65%), Gaps = 19/502 (4%) Strand=Plus/Minus Query 169768 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTC 169827 ||| |||||||||| | ||||||||| || || | || | ||||| | ||| ||| Sbjct 4819 ATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTTTC 4760 Query 169828 TTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 169887 || | || ||| ||||| |||| || ||| || ||||||| ||||| | | ||| Sbjct 4759 TTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGT 4700 Query 169888 ACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCAC 169947 | ||||||||||||| | || ||| | | |||| ||||| || | || || || ||| Sbjct 4699 ATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTCAC 4640 Query 169948 ATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT--TTATTCTCAGCAATGCATGGTTCAC 170005 || | ||| | ||| | | | | || |||||| || |||||| |||| | Sbjct 4639 AT------ATTAGGCGTAAT-TAC--AACAACTTCTTATTCAATGCTATGCATCGTTC-C 4590 Query 170006 TTG-TTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTAT 170064 ||| | || || | | || | ||||| ||| | | | || || | |||| Sbjct 4589 TTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTAC 4530 Query 170065 AAGTTCGGACAAGAAG--AAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTC 170122 | ||| | || || || |||| || || || |||| || || ||||| ||||| | Sbjct 4529 AGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCC 4470 Query 170123 GTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAG 170182 | | | |||||| ||| | ||||||||||| | |||| || ||||||| | Sbjct 4469 GATTGAACTTCCA--ATG--TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTG 4414 Query 170183 TTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACT 170242 || ||| | ||| || | | ||| || | | | ||| ||| ||| | || ||| Sbjct 4413 CTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTCTTTTAACC 4354 Query 170243 TGAATGGTTTCAACTTTAACCA 170264 | |||| ||| || || ||||| Sbjct 4353 TAAATGATTTTAATTTCAACCA 4332 >seq560 Length=20368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 169819 GCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 169878 ||| | ||||| | || ||| |||||||||| || |||||||||||||| ||||| Sbjct 20271 GCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGA 20330 Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGC 169916 ||||| |||||||||||||||||| | || ||||| || Sbjct 20331 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 >seq14 Length=24855542 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171228 GAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCT 171287 ||||||||||| ||| | || || ||| | || | || || || ||||| ||||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 171288 TTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGG 171347 || || | ||| | ||||| ||| ||||||| || || || || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 171348 ACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCT 171407 | || | || | || ||||| | || || | | || || || || || ||| Sbjct 952076 ATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTCT 952017 Query 171408 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACT 171466 || | || | ||||||||||| || || || ||||||||||||| ||| ||||| || Sbjct 952016 CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579198182116960