Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq14 152 6e-32 seq287 93.3 5e-14 >seq14 Length=24855542 Score = 152 bits (168), Expect = 6e-32 Identities = 181/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 169985 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 170044 ||||| |||||||| |||||||| || |||||||| | || || ||||| || |||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 170045 TTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 170104 ||||| | || | |||| | ||||| || ||||| ||||| || || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 170105 ACATCCTCTATTGGCATTATT-GGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAG 170163 | | || | || |||| | || || |||| ||| | ||||| || || ||||| Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 170164 TCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 170223 |||| | ||| | |||||||||||||| ||||||||||| ||||||| ||||| || || Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 Query 170224 ATT 170226 || Sbjct 951957 CTT 951955 >seq287 Length=58314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 168190 TACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTT 168249 |||||||| ||||| ||||||||| | ||| || ||||| |||| ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 168250 GCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAA 168309 ||||| || || | || || | || | | || ||| | | ||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 168310 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 168369 || || || ||| || ||||| || |||| || | ||||||| || | || Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 168370 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 168429 ||| | ||||||||||| || || ||||| || || || || | ||||| ||| ||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 168430 TTTG 168433 | || Sbjct 44414 TATG 44411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 168536 AAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCC 168595 |||| ||| |||| || || ||| |||| ||||||||||| || || || |||| ||||| Sbjct 17766 AAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCC 17707 Query 168596 AATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTG 168655 |||| | ||||||||||| | || || || || ||||| | ||| |||||| | | Sbjct 17706 AATA----TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAG 17651 Query 168656 TCGGCATCTGGTTCAC 168671 | || || | ||| || Sbjct 17650 TAGGTATTTAGTTTAC 17635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574459101722520