Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1998 201 1e-46 seq151 107 2e-18 seq287 105 8e-18 seq560 87.8 2e-12 >seq1998 Length=1172 Score = 201 bits (222), Expect = 1e-46 Identities = 295/414 (71%), Gaps = 5/414 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | || || |||||||| Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| ||||| |||||||| || | | | Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGC 168903 || |||||| | |||||||| |||||| |||||||| || || |||||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 26 >seq151 Length=113734 Score = 107 bits (118), Expect = 2e-18 Identities = 264/394 (67%), Gaps = 15/394 (4%) Strand=Plus/Minus Query 168855 GTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTAT 168914 ||||| | |||||||| | |||||| |||||||| | || | | ||| || || | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 168915 TCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTG 168974 || | | || ||| ||||| |||| ||| ||| || ||||||||||||||| || || Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 168975 GAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCC 169034 | | |||||||| ||| | |||||| | | |||||||||| ||| | || || || | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 169035 ATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCAC 169094 | || ||| ||| || | | | ||||| || |||||| |||| | Sbjct 4641 ACATATTAGGCGTA------AT-TACAACAACTTCTTATTCAATGCTATGCATCGTTC-C 4590 Query 169095 TTG-TAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 ||| |||| ||| | | || | || || || | | |||| || | ||||| Sbjct 4589 TTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTAC 4530 Query 169154 AAGTTCGGTCAAGAAG--AAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTA 169211 | ||| || || || || |||| |||||||| | || || ||||| || || || Sbjct 4529 AGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCC 4470 Query 169212 GATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 |||| | |||||| ||| | |||||||||||| Sbjct 4469 GATTGAACTTCCA--ATGTA--TTTCAACAACTC 4440 >seq287 Length=58314 Score = 105 bits (116), Expect = 8e-18 Identities = 266/399 (67%), Gaps = 14/399 (4%) Strand=Plus/Minus Query 168849 GACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTG 168908 |||| ||||| | |||||||| | |||||| |||||||| | || | | | || Sbjct 18075 GACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTA 18016 Query 168909 CAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAA 168968 || ||| | | || ||| |||| |||| | ||| ||| || ||||||||||||||| Sbjct 18015 TTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAA 17956 Query 168969 TTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATC 169028 | || | |||||||| | | | |||||| | | ||||||||||| ||||| || | Sbjct 17955 GCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACC 17896 Query 169029 CCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATG 169088 | || || || |||| ||| || | | | ||||| || |||||| Sbjct 17895 CATTTCACATATCAGGCGTA------AT-TACACCAACTTCTTATTCAGTGCTATGCATC 17843 Query 169089 GTTCACTTG-TAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTAT 169147 |||| |||| |||| ||| | | || | || || || | | |||| || | Sbjct 17842 GTTC-CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAA 17784 Query 169148 GGTTACAAGTTC-GGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 |||||| ||| | | |||| ||| |||| |||||||| | || || ||||| || || Sbjct 17783 AGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTT 17724 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || |||| | |||||| ||| |||||||||||| Sbjct 17723 TGGCCGATTGAACTTCCAATAT----ATTTCAACAACTC 17689 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 168818 TACATGGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 168876 ||||||||| | |||||||| ||| | | ||||| ||||| | |||||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTC-GACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936 ||| |||||||| | || | | || || || ||| | | || ||| ||||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGT 168996 ||| || ||| || | ||||| ||||||| | | | |||||||| || | || Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 168997 ATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATAT 169038 |||| | || ||||||||||| |||||||| || || || || Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 >seq560 Length=20368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 168914 TTCCTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTC 168972 || |||| | || ||| |||||||||| || ||||||||||||||||||||||| || Sbjct 20276 TTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTC 20335 Query 168973 TGGAACATTCAACTTCATGTTCGTATTCCAAGC 169005 ||| || |||||||| ||| | |||||||| || Sbjct 20336 TGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564427354905120