Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1998 178 2e-39 seq16 100 3e-16 seq287 93.3 5e-14 seq14 93.3 5e-14 seq151 91.5 2e-13 seq560 87.8 2e-12 >seq1998 Length=1172 Score = 178 bits (196), Expect = 2e-39 Identities = 295/426 (69%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| ||| | || ||| | | || || | || |||||||| || ||| Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 316 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 315 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 256 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || |||||||| || |||| | || || |||||| | || || ||||| || Sbjct 255 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 196 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||||||||| |||||||| ||||||||| || | | | Sbjct 195 TGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 136 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | |||||||| | |||||||||| | | | Sbjct 135 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 76 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||| Sbjct 75 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 16 Query 172240 GTGTTC 172245 || ||| Sbjct 15 GTTTTC 10 >seq16 Length=28979753 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 157912 CCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCC 157971 || ||||| || | ||||| | | |||||||| |||||||||| ||||| || Sbjct 23693506 CCACCAGTTATTTTGAGAAACATAATGGAGAATCCAGCTTGGTACACACAGTACACACCT 23693447 Query 157972 TATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATC 158031 ||||||||||||||||||||||| || ||||| | || | ||||| ||||| | || Sbjct 23693446 TATCAAGCTGAGATATCTCAGGGGAGGTTGGAGTCCTTGCTTAATTATCAAACCATGATT 23693387 Query 158032 ACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCA 158091 || || ||||| ||| | || || | || || || | | || |||| ||||| || Sbjct 23693386 ACGGATCTCACTGGATTGCCCATGTCGAATGCTTCATTGCTCGACGAAGGGACTGCTGCT 23693327 Query 158092 GCAGAAGCAAT-GCTGTTAGC-ATATAATTCTACAAGAG-ATAAGAAGACT 158139 || || || || ||| | || ||| || ||| ||| | | || |||||| Sbjct 23693326 GCTGAGGCTATGGCTATGTGCAATAATATCCTAAAAGGGAAGAAAAAGACT 23693276 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| ||||| ||| ||| || ||| || ||||| || ||||| || | ||| Sbjct 23689849 CAGGTGGGTCTGACAAGTCCAGGTTTTATTGGAGCTGATGTTTGCCATCTTAATCTCCAT 23689790 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCA 159783 || ||||| || |||||||||||||| || ||||| ||| | |||||||||||||| Sbjct 23689789 AAAACATTTTGCATTCCACATGGAGGCGGTGGTCCAGGCATGGGTCCTATTGGTGTGAAG 23689730 Query 159784 AAACATCTCACACCATTTGTA 159804 ||||| | |||||||| || Sbjct 23689729 AAACACTTGGCACCATTTTTA 23689709 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613 |||||||||| || || ||||| || | |||| | || ||||||||||||| Sbjct 23690519 TTACATATCCTTCCACTCATGGAGTCTATGAAGAAGGTATTGATGAGATATGTAAGATCA 23690460 Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 ||||||| ||||||||||| |||||| | ||||| || || | ||||| ||||| Sbjct 23690459 TTCATGACAATGGTGGTCAAGTATATATGGATGGGGCTAACATGAATGCTCAGGT 23690405 >seq287 Length=58314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 172147 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTA 172206 |||||||| | |||||||||| | || || ||||| | || ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 172207 GCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAG 172266 ||||||||||| | ||| || | || || || ||| | | |||||| | ||| || Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 172267 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTG 172326 || || ||| || | ||||| ||||| | || || ||||||||||| | || Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 172327 TTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACAT 172367 ||| | || ||||| ||||| || ||||| || || ||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 172184 GTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGT 172243 ||||| | || ||||| | ||| ||||||||||| | ||| || | | || ||| | Sbjct 18069 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTT 18010 Query 172244 TCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAG 172303 || | | |||||| | || |||| | || ||| || ||||||| ||||| | || | Sbjct 18009 TCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTG 17950 Query 172304 GTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCC 172363 || |||||||||| | | || ||| | | ||||| ||||| || || || || || | Sbjct 17949 ATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTC 17890 Query 172364 ACATGGCAGGAGTA 172377 |||| |||| ||| Sbjct 17889 ACATATCAGGCGTA 17876 >seq14 Length=24855542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 173650 GAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCA 173709 |||||||||||| ||| | || || ||| | || | || || || ||||| | || Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 173710 TTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGG 173769 ||||| | ||| | ||||| ||| | ||||| || ||||| || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 173770 ACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCT 173829 | | | || | || ||||| | || || | | || || ||||| || ||| Sbjct 952076 ATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTCT 952017 Query 173830 CAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACT 173888 || | || | |||||||||||||| || || ||||||||||||| ||| ||||| || Sbjct 952016 CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 >seq151 Length=113734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 326/505 (65%), Gaps = 21/505 (4%) Strand=Plus/Minus Query 172184 GTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGT 172243 ||||| | || ||||| | ||| ||||||||||| | ||| || | ||| || ||| | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 172244 TCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAG 172303 || | | |||||| | ||| |||| || ||| || ||||||| ||||| | | | Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 172304 GTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCC 172363 ||| |||||||||||| | || ||| | | |||| ||||| || | || || || | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 172364 ACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCT--TTATTCTCAGCAATGCACGGTTC 172421 |||| ||| ||| || | | || |||||| || ||||| |||| Sbjct 4641 ACATATTAGGCGTA---------ATTACAACAACTTCTTATTCAATGCTATGCATCGTTC 4591 Query 172422 TTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATA 172481 || | || ||| | | || | || || || || |||| || | | || Sbjct 4590 CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTA 4531 Query 172482 CAAGTTCGGACAAGAAG--AAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 || ||| | || || || |||| || || || |||| || || ||||| ||||| Sbjct 4530 CAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGC 4471 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTAG 172597 || | | |||||| ||| | |||||||||||| | |||| || || ||||||| Sbjct 4470 CGATTGAACTTCCA--ATG--TATTTCAACAACTC--TCATTCTTTACATTTTTTCCTAG 4417 Query 172598 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 172657 | || ||| | ||| || | | ||| || | | | ||| | | ||| | || | Sbjct 4416 TTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTCTTTTA 4357 Query 172658 ACCTTAACGGTTTCAACTTCAACCA 172682 |||| || | ||| || |||||||| Sbjct 4356 ACCTAAATGATTTTAATTTCAACCA 4332 >seq560 Length=20368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 172219 CCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCT 172278 ||||| |||| || |||| | ||| | | |||||| | |||||||| || ||| Sbjct 20253 CCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCT 20312 Query 172279 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGC 172334 ||||||||||| ||||| ||||| ||||| |||||||||||| | || ||||| || Sbjct 20313 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588036359057840