Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1998 194 2e-44 seq14 132 5e-26 seq287 89.7 6e-13 >seq1998 Length=1172 Score = 194 bits (214), Expect = 2e-44 Identities = 309/438 (71%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 436 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 377 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 376 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | |||||| | | || | | |||||||| ||||| |||||||| || || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 162743 GTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCG 162801 |||| |||||||| || ||||| ||| || ||||| || || ||||||||||| || | Sbjct 77 GTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 19 Query 162802 GCAGTCTTCCTGGTCTAT 162819 || || ||| || ||||| Sbjct 18 GCTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 132 bits (146), Expect = 5e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| |||||||| || |||||||| | || || ||||| || ||||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 164418 ||||| | || | ||| | ||||| || ||||| ||||| || || | |||| ||||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 164419 ACATCCTCTATTGGCATTATT-GGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAG 164477 | | || | || |||| | || || |||| ||| | ||||| || || || || Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 164478 TCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTA 164522 ||| | || | ||||||||||||||||| || ||||||||||| Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTA 951973 >seq287 Length=58314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 313/483 (65%), Gaps = 12/483 (2%) Strand=Plus/Minus Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTA 162771 ||||| || |||| ||| |||| || | || ||||| |||| ||||| | || Sbjct 18106 TACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTT 18047 Query 162772 GCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 162831 ||||| || || | ||||||| | | || ||| || ||||||| | || | Sbjct 18046 GCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAG 17987 Query 162832 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTC 162891 || | ||| ||| | ||||| | || | | || || ||||||| | | |||| Sbjct 17986 GGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTA 17927 Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||| | | ||||||||||| || || || || || ||||| | || || | | Sbjct 17926 TTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTAA----TTAC 17871 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 163011 | ||| | |||||||| ||||| |||| ||| | || ||| | | Sbjct 17870 ACCAAC--TTCT-TATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAG 17814 Query 163012 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAA-GAAGAAGAGAC 163070 || || || ||| | | || || | |||||| ||| || || || ||| | || Sbjct 17813 GAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAAC 17754 Query 163071 ATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163130 || || ||| | || || |||||||| || || || |||| |||||||||| || || Sbjct 17753 TTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATAT--AT--TT 17698 Query 163131 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 163190 ||||||||| | ||| || || || ||||| | ||| |||||| | || || || | ||| Sbjct 17697 CAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTT 17638 Query 163191 CAC 163193 || Sbjct 17637 TAC 17635 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTA 162771 |||||||| ||||| |||||||| || || || ||||| |||| ||||| | || Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 162772 GCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 162831 ||||| || || | ||||||| | || || ||| || ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 162832 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTC 162891 || || ||| | |||||| | || | | | || ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGT 162941 ||| | || ||||||||||| || ||||| || || ||||| || || || Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGT 44425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557569927973800