Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1998 259 5e-64 seq14 150 2e-31 seq287 125 8e-24 seq151 114 1e-20 >seq1998 Length=1172 Score = 259 bits (286), Expect = 5e-64 Identities = 315/427 (74%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 426 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 367 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || ||||| ||| | | ||| ||||| || || Sbjct 366 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGA 308 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | ||||| ||||| || || || Sbjct 307 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTC 248 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| || ||||| ||||| ||||| ||| | || || || || || |||||||| Sbjct 247 TGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGC 188 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| | | || || ||||| |||||||| ||||||| | || | ||| | ||||| Sbjct 187 GGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 128 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || |||||||||||||||||||| || |||||| ||||| Sbjct 127 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 68 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| || || || || ||||||| ||| | Sbjct 67 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 8 Query 167516 CGTCTAT 167522 ||||| Sbjct 7 GATCTAT 1 >seq14 Length=24855542 Score = 150 bits (166), Expect = 2e-31 Identities = 186/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || ||||||||||| || || ||||| || | || ||| |||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 169271 || |||| || |||| ||||| |||||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 169272 GGTCTTTGGACAAGTTCCATCGGTATTATT-GGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| || | |||| |||| | ||||| |||| || | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 ||| ||||| || | ||| | |||||||||||||| || |||||||| ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 169391 GAACATCCTCTT 169402 || || ||||| Sbjct 951966 AAATATTCTCTT 951955 >seq287 Length=58314 Score = 125 bits (138), Expect = 8e-24 Identities = 315/476 (66%), Gaps = 16/476 (3%) Strand=Plus/Minus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 || || ||| |||||||| |||| || | || ||||| |||| ||||| | |||| Sbjct 18106 TACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTT 18047 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| || |||| || || | | | ||| ||| | ||||||| | || | Sbjct 18046 GCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAG 17987 Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTC 167594 || | ||| ||| | |||||||| || | || || || ||||||| | | |||| Sbjct 17986 GGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTA 17927 Query 167595 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 ||| | | |||||||||||||| || ||||| || || || ||||| | Sbjct 17926 TTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGT--------AA 17875 Query 167655 TTCGGC--GGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTC 167712 || | |||| | |||||||| ||||| |||| || | |||||| || | Sbjct 17874 TTACACCAACTTCT-TATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAA 17816 Query 167713 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC-GGTCAGGAAGAAGAG 167771 |||||||| ||| | | ||| || | |||||| ||| | | | || ||| | Sbjct 17815 AGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAA 17756 Query 167772 ACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 167831 || ||||| ||| | |||||||||||||| || || || ||| |||||||| || Sbjct 17755 ACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT----ATAT 17700 Query 167832 TTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTAT 167887 ||||||||||| | || | || || ||| | | || |||||| | || ||||| Sbjct 17699 TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTAT 17644 Score = 102 bits (112), Expect = 9e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 || |||||||||||||||||||| || || || ||||| |||| ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| || |||| || || | || | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTC 167594 || || ||| | ||||| || || | || | || ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 167595 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 ||| | || |||||||||||||| |||||||| || || || | ||||| ||| ||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 167655 T 167655 | Sbjct 44414 T 44414 >seq151 Length=113734 Score = 114 bits (126), Expect = 1e-20 Identities = 293/440 (67%), Gaps = 17/440 (4%) Strand=Plus/Minus Query 167452 GTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTAT 167511 ||||| |||| ||||| | ||||||||| || |||| || || | ||| | ||| | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 167512 TCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTG 167571 || | ||||||| | ||| | || ||| ||| | |||||||| || | | || Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 167572 GTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCC 167631 ||| ||||||| ||| |||| ||| | | ||||||||||||| | ||||| || | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 167632 ATATGCTCGGCGTTGCTGGCGTATT-CGGC-GGTTCTCTGTTCAGTGCAATGCACGGTTC 167689 | || | ||||| ||| | | |||| | |||| ||| ||||| |||| Sbjct 4641 ACATATTAGGCGT--------AATTACAACAACTTCT-TATTCAATGCTATGCATCGTTC 4591 Query 167690 TCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTA 167749 || | |||||| || | |||||||| ||| | | ||| || | |||| Sbjct 4590 CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTA 4531 Query 167750 CAAGTTCGGTCAGGAAG--AAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGT 167807 || ||| || | || || | || ||||| ||| | |||||||||||||| || || Sbjct 4530 CAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGC 4471 Query 167808 CGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCA 167867 || ||| |||||||| | || ||||||||||| | || | || || ||| | | Sbjct 4470 CGATTGAACTTCCAAT--GTAT--TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTT 4415 Query 167868 GCATGGCCTGTTGTTGGTAT 167887 || |||||| | || ||||| Sbjct 4414 GCTTGGCCTATAGTAGGTAT 4395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560593851655600