Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1998 163 4e-35 seq287 114 2e-20 >seq1998 Length=1172 Score = 163 bits (180), Expect = 4e-35 Identities = 279/405 (69%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | Sbjct 414 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 355 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 354 GCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATT 295 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || || |||||||| || | Sbjct 294 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 235 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || ||||| || |||||||| ||| | ||||| Sbjct 234 CCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGAT 175 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 174 GAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 115 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| | |||||||| Sbjct 114 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 55 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTC 215719 |||||| || || || ||||| | ||||| ||| || ||| Sbjct 54 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 10 >seq287 Length=58314 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || || || ||||| | |||||||| | |||||| || || || | Sbjct 44641 AGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTC 44582 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 ||| | |||| || || ||| | | |||||| | ||| |||| || ||| Sbjct 44581 ATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGAAGCTTTTCTA 44522 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 || ||||| || |||| || | | ||||||| || |||| ||| ||||||||| Sbjct 44521 ATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTCTAGGCTGAGC 44462 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGT 215859 ||||||| || ||||||||||| ||||| ||||| || |||||| Sbjct 44461 ACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 Score = 107 bits (118), Expect = 3e-18 Identities = 278/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||| ||||| || || | ||||| | |||||||| | |||||| || || || | Sbjct 18093 AGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTC 18034 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 ||| | || | || || ||| | | |||||| | || |||| | ||| ||| Sbjct 18033 GTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTT 17974 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 || |||||| || |||| || || | ||||||| | | |||| ||| || |||||| Sbjct 17973 ATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTGAGC 17914 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 ||||||| || || |||||||| ||||| | ||| | | | | | ||| | Sbjct 17913 ACAACATCCTTATACACCCATTTCACATATCAGGCG----TAATTACACC--AACTTC-T 17861 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTG-TTACATCTTCTCTAATCAGAGAGACAACTGAG 215932 | ||| ||| ||||| |||| |||| | || ||| | | || | || || || | Sbjct 17860 TATTCAGTGCTATGCATCGTTC-CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAA 17802 Query 215933 CAAGAATCTCAGAACTACGGTTACAAGTTC-GGACAAGAGGAGGAAACATACAACATCGT 215991 | |||| || | |||||| ||| | ||||||| |||| || || ||| | Sbjct 17801 AATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCAT 17742 Query 215992 AGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 |||||| || ||||| ||||| || | | |||||||| || |||||||||||| Sbjct 17741 AGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT----ATATTTCAACAACTC 17689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745062796003120