Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1998 275 7e-69 seq287 165 9e-36 seq14 159 4e-34 seq151 131 2e-25 seq3 109 6e-19 seq560 105 8e-18 >seq1998 Length=1172 Score = 275 bits (304), Expect = 7e-69 Identities = 308/409 (75%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| | || ||||| |||||| | |||||||| ||| | |||| || Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| || ||||| ||||| || || || || ||||||||||||||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | || || ||||| || || |||||||| | |||| | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | || || || || || |||||||| ||| | | |||||||| Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| || |||||||| || | |||| | |||||| | | ||||||||||| Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 ||||||||||||||||||||||| || ||| || |||||||| ||||||||| || Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 50 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTAT 165198 |||||| || ||||| || |||||| | || |||||| || ||||| Sbjct 49 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq287 Length=58314 Score = 165 bits (182), Expect = 9e-36 Identities = 321/475 (68%), Gaps = 8/475 (2%) Strand=Plus/Minus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| ||| |||||| |||||||||| | | ||| |||||||| ||||||||| Sbjct 44880 TTTATTATTGCTTTCATCACTGCTCCCCCAATAAATATTAATGGTATTTTTGAACCTGTT 44821 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 | |||||| | || | || || || || ||| || | | |||| ||||| Sbjct 44820 TTTAGATCTCTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCA 44761 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 || || || || || | | ||||||| | || ||||||||||| ||| Sbjct 44760 GCTATAGGTTGGCATTTTAACTCAATTTGGGT--------CTATTGATGAATGGTTATAC 44709 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 || | | |||| | | |||| ||||| | |||||||||| |||||| Sbjct 44708 AAAGACAATGCTTATGAACTAATTGTTCAACACTTTTAACTTAGTGTAGCTTGTTACATG 44649 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || || || ||||| |||||||||||| || |||||| Sbjct 44648 GGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCATAT 44589 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGT 165216 || | ||| || ||||| |||||| || ||||||| | ||| | || || Sbjct 44588 TCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGAAGC 44529 Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 || ||| || | ||||| || || | || | || ||| |||| ||| | || ||| | Sbjct 44528 TTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTCTAG 44469 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTAT 165331 || || || ||||| |||||||| || || ||||| | ||||| ||| |||| Sbjct 44468 GCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTAT 44414 Score = 138 bits (152), Expect = 1e-27 Identities = 345/516 (67%), Gaps = 26/516 (5%) Strand=Plus/Minus Query 164809 TGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCG-CCGCTACAATTTGT---TTTATTAC 164864 ||||| ||| || | |||| ||||| || | | |||| |||| || | ||||||| Sbjct 18388 TGGTTTGGTATTTTGATGA-CCCCTACTTTATAGACCGC-ACAACTTCTATATTTATTAT 18331 Query 164865 TGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTC 164924 ||||||||| ||||||||| | | ||| ||||||||||||||||||| | || Sbjct 18330 TGCATTCATTAATGCTCCCCCGATAAATATTAATGGTATTCGTGAACCTGTTTTTAGATC 18271 Query 164925 TCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC------GC 164978 |||| | || | || || || || ||| || | | |||| ||||| || Sbjct 18270 TCTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCTTCTGCAGC 18211 Query 164979 AATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAA 165038 || || || || || | || | || | || ||||||||||| ||||| Sbjct 18210 TATAGGTTGGCATTTTTACTCAATCTAGGT--------CTATTGATGAATGGTTATACAA 18159 Query 165039 CGGTGGTCCTTACCAGTTGGTTGTCTTCCA--CTTCCTCATCGGTGTAGCTTGCTACATG 165096 | | |||||| | | |||| || | ||| | | |||||||||| ||||| Sbjct 18158 TGACGATCCTTAAGAACTAATTGT--TCAATTCTTTTTACTTAGTGTAGCTTGTTACATA 18101 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||| |||||||| |||| || | || ||||| |||||||||||| || |||||| Sbjct 18100 GGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATAT 18041 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGA-G 165215 || | ||| || || || |||||| || ||||||| | || | ||||| | Sbjct 18040 TCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGG-CTAGGGATG 17982 Query 165216 TTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCA 165275 ||| ||| || |||||||||| || | || || || ||| |||| || | | || ||| | Sbjct 17981 TTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTA 17922 Query 165276 AGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311 | || || ||||| ||||| || || || ||||| Sbjct 17921 GACTGAGCACAACATCCTTATACACCCATTTCACAT 17886 >seq14 Length=24855542 Score = 159 bits (176), Expect = 4e-34 Identities = 188/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| |||||||| ||||||||||| || || ||||||| || || ||| ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| |||| ||||| |||||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTA-TTGGTCTTGCTCTCAACCTTCGTGCTTATGA 167008 ||| | |||| || | |||| |||| | ||||| |||| || | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 167009 CTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAA 167068 ||| ||||| || || | | |||||||| |||||||| ||||| || ||||| | || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 167069 GAACATTCTCTT 167080 || |||||||| Sbjct 951966 AAATATTCTCTT 951955 >seq151 Length=113734 Score = 131 bits (144), Expect = 2e-25 Identities = 343/521 (66%), Gaps = 18/521 (3%) Strand=Plus/Minus Query 164809 TGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGT---TTTATTACT 164865 ||||| ||| || | |||||||| ||| | || | |||| || | ||||||| | Sbjct 5140 TGGTTTGGTATTTTGATGATCCCTACTTTATTGACCAC-ACAACTTCTATATTTATTATT 5082 Query 164866 GCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCT 164925 |||||||| ||||||||| | ||||| ||||||||||||||||||| | ||| Sbjct 5081 GCATTCATTAATGCTCCCCCGATAAACATTAATGGTATTCGTGAACCTGTTTTTAGATCT 5022 Query 164926 CTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTC------CGTCTTCTAACGCA 164979 ||| | || | || || || || ||| || | | ||| | ||||| || Sbjct 5021 CTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCTTACTTCTGCTTCTGCAGCT 4962 Query 164980 ATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAAC 165039 || || || || || | || ||| ||| | ||||||||| | ||||| Sbjct 4961 ATAGGTTGGCATTTTTACTCAATCTGGCT--CTG------TTGATGAATGGCTATACAAT 4910 Query 165040 GGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGT 165099 | |||||| | | |||| |||| | | |||||||||| ||||| ||| Sbjct 4909 GACTATCCTTAAGAACTAATTGTTCAATACTTTTTACTTAGTGTAGCTTGTTACATAGGT 4850 Query 165100 CGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGC 165159 ||||||| |||| || | | ||||| |||||||||||| || |||||| Sbjct 4849 GATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCA 4790 Query 165160 GCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTC 165219 || | ||| || |||| |||||| || ||||||| | ||| | || ||||| Sbjct 4789 GCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTT 4730 Query 165220 TCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCA 165279 ||| || |||||||||| || | | ||||| ||| |||| |||| | || ||| | | Sbjct 4729 TCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACT 4670 Query 165280 GAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGT 165320 | || ||||| ||| | || || || ||||| | ||||| Sbjct 4669 AAGCACAACATCCTTGTACACCCATTTCACATATTAGGCGT 4629 >seq3 Length=29412403 Score = 109 bits (120), Expect = 6e-19 Identities = 343/528 (65%), Gaps = 30/528 (6%) Strand=Plus/Plus Query 164809 TGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCA 164868 ||||| |||| ||| |||||||| ||| | | || || | ||||||| || Sbjct 11375066 TGGTTTGGTGCTCTGATGATCCCTACTTTATTAACTGCAACTTCTATATTTATTATGGCT 11375125 Query 164869 TTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAG-GTTCTCT 164927 || || | ||| | | || | |||||||||||| ||||| |||| | | ||| | Sbjct 11375126 TTGATTGATGCCTCTCTAGTATATATTGATGGTATTTGTGAAACTGTTTTTGAGATCTTT 11375185 Query 164928 AATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACT 164987 | || || |||| | | ||| |||| | |||| |||||| | || | | Sbjct 11375186 ACATTATGGAAACA---TTTTTTCTAGTGCCATTATTCCTACTTCTACGACTATATGTTT 11375242 Query 164988 TCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCC 165047 || | ||||| || ||||||| ||| | || ||||||| ||| ||||| ||| | | Sbjct 11375243 GCATTGTTATCCAATATGGGAAGTGGCATCTATTGATGAATAGTTATACAATTGTGATGC 11375302 Query 165048 TTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTG 165107 ||| || | |||| | |||||| | |||||||||| |||| Sbjct 11375303 TTATGAGCTAATTGTTCTACACTTCTT-----------------ACATGGGTCGCAAGTG 11375345 Query 165108 GGAA---CT-GTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCAC 165163 |||| || || || | || | ||||| |||||||||| || |||||| | || Sbjct 11375346 GGAAAACCTAGTTTT--TGTCTAGTTATGCTTCCTTGGATTGTTGTTGCATATTCAGTAC 11375403 Query 165164 CTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTG 165223 || | || || |||| | ||| | || ||||||| | | ||| | || || || Sbjct 11375404 CTATTGC-ACTACTGCTGTTGTTAT--TGATCTATCCAATTGATCAGAGAAGCTTTTCAA 11375460 Query 165224 ATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAAC 165283 ||| |||||||| | |||||| || | || |||| |||| ||| ||| |||| | | Sbjct 11375461 ATGTTATGCCTCCCGAAATCTCTAGTGCATTCAACTTTATGATCGCATTCTAAGCTAATC 11375520 Query 165284 ATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTAT 165331 | ||||| ||||| | || || ||||| | ||||| ||| | |||| Sbjct 11375521 ACAACATCCTTATTTACCCATTTCACATATTAGGCGTAGCTAGTGTAT 11375568 >seq560 Length=20368 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 165163 CCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCT 165222 ||||| || |||||| | || ||||| || ||||||| | ||||| || || || ||| Sbjct 20253 CCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCT 20312 Query 165223 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGC 165278 |||||||||||||| || |||||||||||||| |||| |||| | || ||||| || Sbjct 20313 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563646574610560