Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1998 188 8e-43 seq287 102 9e-17 seq151 100 3e-16 >seq1998 Length=1172 Score = 188 bits (208), Expect = 8e-43 Identities = 293/419 (70%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 426 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 367 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | |||||||| || || || || || || Sbjct 366 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGAT 307 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || ||| Sbjct 306 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCT 247 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | || || || || || |||||||| Sbjct 246 GGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCG 187 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || || ||||||||| | || || | | |||||| Sbjct 186 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 127 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 126 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 67 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 66 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 8 >seq287 Length=58314 Score = 102 bits (112), Expect = 9e-17 Identities = 330/504 (65%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 170054 GTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTAT 170113 ||||| |||||||||| | ||| |||||||| |||| || || | | | ||| | Sbjct 18069 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTT 18010 Query 170114 TCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAG 170173 |||| | ||||| | || |||||| ||| || | | ||||||||||| | || | Sbjct 18009 TCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTG 17950 Query 170174 GTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCC 170233 || || ||||| | | | |||||| | | ||||||||||| ||||| |||||||| | Sbjct 17949 ATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTC 17890 Query 170234 ATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTT-CTCA--GCAATGCACGGTT 170290 | || |||| ||| | | | | | |||| ||| || ||||| ||| Sbjct 17889 ACATATCAGG-------CGTAATTAC--ACCAAC-TTCTTATTCAGTGCTATGCATCGTT 17840 Query 170291 CACTTG-TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGA 170349 | |||| |||| ||| | | || | || || ||| | || | || || | | Sbjct 17839 C-CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGT 17781 Query 170350 TACAAATTC-GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGG 170408 |||| |||| | |||| ||| |||| || || || | || || ||||| || ||||| Sbjct 17780 TACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGG 17721 Query 170409 TAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGC 170468 || | | |||||||||| || ||||| || | | | || || ||||| | Sbjct 17720 CCGATTGAACTTCCAATAT----ATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGT 17665 Query 170469 TACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAA 170528 | | | ||| ||||| | || | ||| ||| | | |||| ||| ||| | |||| Sbjct 17664 TGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAG 17605 Query 170529 CCTTAATGGATTTAACTTCAACCA 170552 ||| |||| ||| | |||||||| Sbjct 17604 CCTAAATGATTTTGATTTCAACCA 17581 Score = 102 bits (112), Expect = 9e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| | |||||||||| | || || ||||| |||||||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| |||| || || | || | || ||||| | ||||| | ||| || Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| || || | | ||||| ||||| | || || || ||||| || | ||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 ||| | || ||||||||||| |||||||||||||| || || Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 >seq151 Length=113734 Score = 100 bits (110), Expect = 3e-16 Identities = 330/505 (65%), Gaps = 21/505 (4%) Strand=Plus/Minus Query 170054 GTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTAT 170113 ||||| |||||||||| | ||| |||||||| |||| || || | ||| | ||| | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 170114 TCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAG 170173 |||| | ||||| | ||| ||||| ||| || | | ||||||||||| | | | Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 170174 GTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCC 170233 ||| || ||||| ||| | |||||| | | |||||||||| ||| | |||||||| | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 170234 ATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTT-CTCA--GCAATGCACGGTT 170290 | || ||| ||| | | | | | |||| ||| || ||||| ||| Sbjct 4641 ACATATTAGG-------CGTAATTAC--AACAAC-TTCTTATTCAATGCTATGCATCGTT 4592 Query 170291 CACTTG-TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGA 170349 | |||| |||| ||| | | || | || || ||| | || | || || | | Sbjct 4591 C-CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGT 4533 Query 170350 TACAAATTCGGACAAGAAG--AAGAAACATACAACATTGTTGCAGCACATGGATACTTTG 170407 |||| |||| | || || || |||| || || || | || || ||||| || |||| Sbjct 4532 TACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTG 4473 Query 170408 GTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTG 170467 | || | | |||||||| | || ||||| || | | | || || ||||| | Sbjct 4472 GCCGATTGAACTTCCAATGT----ATTTCAACAACTCTCATTCTTTACATTTTTTCCTAG 4417 Query 170468 CTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTA 170527 | | | ||| ||||| | || | ||| ||| | | |||| ||| ||| | |||| Sbjct 4416 TTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTCTTTTA 4357 Query 170528 ACCTTAATGGATTTAACTTCAACCA 170552 |||| |||| ||||| |||||||| Sbjct 4356 ACCTAAATGATTTTAATTTCAACCA 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582833290373600