Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1998 259 5e-64 seq151 163 3e-35 seq287 156 5e-33 >seq1998 Length=1172 Score = 259 bits (286), Expect = 5e-64 Identities = 315/427 (74%), Gaps = 2/427 (0%) Strand=Plus/Plus Query 84530 GAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCAT 84589 ||| ||||||| || |||||||| ||||| || || |||||| ||||| || ||||| Sbjct 10 GAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCAT 69 Query 84590 ACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAA 84649 ||| ||||| | ||||||||| ||||||||||||||| | | |||||| | ||| Sbjct 70 ACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAA 129 Query 84650 GTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGC 84709 ||| | |||| || | |||||| || ||||| |||| |||||| || | | ||| || Sbjct 130 GTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCCGC 189 Query 84710 TTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGA 84769 |||||| || || || ||||| | ||| ||||| ||| | |||| | ||||||||| Sbjct 190 TTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGA 249 Query 84770 AATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATC 84829 ||| || |||||||| || | ||||| |||| || || ||||| ||||| |||||||| Sbjct 250 AATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATC 309 Query 84830 AACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTG 84888 || || || ||| ||| ||| || || || || ||||| ||| || | | || ||| | Sbjct 310 TACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAAGTAG 368 Query 84889 GAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAAT 84948 | ||||| | | |||||||| |||| || | |||||| | |||| ||| | ||| | Sbjct 369 GGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGT 428 Query 84949 CACAGAA 84955 |||||| Sbjct 429 TACAGAA 435 >seq151 Length=113734 Score = 163 bits (180), Expect = 3e-35 Identities = 571/881 (65%), Gaps = 39/881 (4%) Strand=Plus/Plus Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 || || ||||| ||||| |||| || ||||| | ||| |||||| | | | | || | Sbjct 4329 CTATGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCGAAAATAGTA 4388 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 ||| |||| || || | ||||||||| | | |||||| || | |||| || |||||| Sbjct 4389 AACTAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTG 4448 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || | ||| |||||| | | || || || || || |||||||| | ||||||||| Sbjct 4449 AAATA--CAT--TGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAA 4504 Query 84270 G----TTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGT 84325 | |||||||| || || ||| |||||| | || || ||||| ||| || Sbjct 4505 GTTTTTTTCCTCT--TTAACTGAATCTGTAACTTTCATTAGCGGATTTATTTTATGTGGT 4562 Query 84326 TTCTCGGATTAGAGAAGAAGTGA-CAAGTGAACCATGCATTGCAGAGAAT-AGAGCTCCA 84383 ||| || | | ||| || | |||| |||| |||||| ||| |||| ||| | Sbjct 4563 TTCCTTTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCATTGAATAAGAAGTTGT 4621 Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443 ||| || || || |||||||| || || | ||||||||| || | | | Sbjct 4622 TGTAAT--------TACGCCTAATATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTC 4673 Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAA 84503 | ||| |||| ||| ||||||| | || | | || || ||||| | || ||| ||| Sbjct 4674 TAGAATACAATCATAAAGTTGAAAATACCAAAACTTCCTAGAGGCATACTATAAGAAAAA 4733 Query 84504 GAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAG 84563 || | || | ||||| | | ||| ||| | ||| | |||||| |||| || Sbjct 4734 CTTCCCTAACCAATTGGATAGATCAAGAAAACAATAATTGCAGTTGCAACACGAGCTGAA 4793 Query 84564 TAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCC 84623 || |||||| | ||||| |||| ||||| | | | | ||||| ||| ||| ||| Sbjct 4794 TATGCAACAAAAATCCAAGGACACATACTCGGTCAAAAATTAAGTTGCCACTCATCACCT 4853 Query 84624 ATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTA 84683 |||||| | | ||| || | |||| |||| |||| ||||| |||| Sbjct 4854 ATGTAACAAGCTACACTAAGTAAAAAGTATTGAACAATTAGTTCTTAAGGATAGTCATTG 4913 Query 84684 TATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGC- 84742 ||||||||||| || | | ||| || | || ||||| ||| ||||| Sbjct 4914 TATAGCCATTCATCAACA--------GAGCCAGATTGAGTAAAAATGCCAACCTATAGCT 4965 Query 84743 -----ATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAA 84797 | ||| | ||| | || |||||| || || ||| | || | ||||| Sbjct 4966 GCAGAAGCAGAAGTAAGAATAATAATACTAGAAATAATATTATTTGCATAAAGTAGAGAT 5025 Query 84798 CCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATG 84857 | | || || ||||| ||||| | ||| | | ||||| ||| || ||||||||| Sbjct 5026 CTAAAAACAGGTTCACGAATACCATTAATGTTTATCGGGGGAGCATTAATGAATGCAATA 5085 Query 84858 ATGAA-ACAGACAGTG-GCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAA 84915 || || | ||| || | | | || ||| || ||||| | | | |||||||| ||| Sbjct 5086 ATAAATATAGAAGTTGTGTGGTCAATAAAGTAGGGATCATCAAAATACCAAACCATACAA 5145 Query 84916 CATAG-ATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 ||| | ||||| |||||| ||| | ||||| |||||| Sbjct 5146 TGTAGAAGGCGGTT-TTAGTGTTGGTTATCCAATTACAGAA 5185 >seq287 Length=58314 Score = 156 bits (172), Expect = 5e-33 Identities = 567/880 (64%), Gaps = 38/880 (4%) Strand=Plus/Plus Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 || || ||||| | ||| |||| || |||| | ||| |||||| | | | | || | Sbjct 17578 CTATGGTTGAAATCAAAATCATTTAGGCTAAAAGACATAATGCTAATATCTAAAATAGTA 17637 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 ||| |||| || || | ||||||||| | | |||||| || | |||| || |||||| Sbjct 17638 AACTAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTG 17697 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || | || |||||| | | || || || || || |||||||| | ||||||||| Sbjct 17698 AAATA----TATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAA 17753 Query 84270 GTTTCCTCTTCTTGACC-GAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTC 84328 |||| || |||| | | ||| |||||| | || || ||||| ||| ||||| Sbjct 17754 GTTTTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTC 17813 Query 84329 TCGGATTAGAGAAGAAGTGA-CAAGTGAACCATGCATTGCAGAGAATA-GAGCTCCACCG 84386 || | | ||| || | |||| |||| |||||| ||| ||||| || | Sbjct 17814 CTTTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCACTGAATAAGAAGTTGGTGT 17872 Query 84387 AATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGG 84446 ||| || || | |||||||| || || ||||||||||| || || | || | Sbjct 17873 AATT--------ACGCCTGATATGTGAAATGGGTGTATAAGGATGTTGTGCTCAGTCTAG 17924 Query 84447 AAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAA 84506 || |||| | | ||||||| | | || | || || ||||| | || ||| ||| | Sbjct 17925 AATACAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATAAGAAAAACAT 17984 Query 84507 CCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 || | || | ||||| | | ||| ||| | | | |||||| |||| || || Sbjct 17985 CCCTAGCCAATTGGATAGATCAAGAAAACAATAATAGTAGTTGCAACACGAGCTGAATAT 18044 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 |||||| | ||||| |||| ||||| || | | | ||||| ||| |||| ||| ||| Sbjct 18045 GCAACAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCCACTCACCACCTATG 18104 Query 84627 TAAGCAAATGCACCA---ATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTA 84683 ||| | | ||| | | | ||| ||| |||| |||| ||||| | |||| Sbjct 18105 TAACAAGCTACACTAAGTAAAAAGAATTGA---ACAATTAGTTCTTAAGGATCGTCATTG 18161 Query 84684 TATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGC- 84742 |||| |||||| || ||| || | || | || ||||| ||| ||||| Sbjct 18162 TATAACCATTCATCAATA--------GACCTAGATTGAGTAAAAATGCCAACCTATAGCT 18213 Query 84743 -----ATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAA 84797 | ||| | |||| | || |||||| || || ||| | || | ||||| Sbjct 18214 GCAGAAGCAGAAGTAGGAATAATAATACTAGAAATAATATTATTTGCATAAAGTAGAGAT 18273 Query 84798 CCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATG 84857 | | || || ||||| ||||| | ||||| | ||||| ||| || ||||||||| Sbjct 18274 CTAAAAACAGGTTCACGAATACCATTAATATTTATCGGGGGAGCATTAATGAATGCAATA 18333 Query 84858 ATGAA-ACAGACAGTG-GCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAA 84915 || || | ||| || || | || ||| || |||| | | | |||||||| || Sbjct 18334 ATAAATATAGAAGTTGTGCGGTCTATAAAGTAGGGGTCATCAAAATACCAAACCATAAAA 18393 Query 84916 CATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 |||| ||| | |||| ||| | ||| | |||||| Sbjct 18394 TGTAGAAGACGTTTTCAGTGTTGGTTATCCAGTTACAGAA 18433 Score = 129 bits (142), Expect = 7e-25 Identities = 315/476 (66%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 84388 ATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGA 84447 |||||||| || || || |||||||| || |||||||||||||| || || |||| || Sbjct 44414 ATACACCAATTACGCCTAATATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGA 44473 Query 84448 AGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAAC 84507 | |||| || ||||||| | || | || || ||||||| || ||| || | Sbjct 44474 ATACAATTATAAAGTTGAAAATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTC 44533 Query 84508 CTTGCCCGAAAGGATACA-CAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 | | || | ||||| | |||| || || | | || | |||||| |||| || || Sbjct 44534 CCTAACCAATTGGATAGATCAAGAAAACCATAATA-GCAGTTGCAACATGAGCTGAATAT 44592 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 |||||| | ||||| |||| ||||| || ||| | ||||||||| |||||||||||| Sbjct 44593 GCAACAAAAATCCAAGGACACATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATG 44652 Query 84627 TAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATAT 84686 ||| | | ||| || ||||| |||| |||| ||||| | || ||| Sbjct 44653 TAACAAGCTACACTAAGTTAAAAGTGTTGAACAATTAGTTCATAAGCATTGTCTTTGTAT 44712 Query 84687 AGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTA 84746 | |||||| || ||| ||||||| | | ||||| ||| ||||| | Sbjct 44713 AACCATTCATCAATA--------GACCCAAATTGAGTTAAAATGCCAACCTATAGCTGCA 44764 Query 84747 GAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACT 84806 || | |||| | || |||||| || || ||| | || | ||||| | | || Sbjct 44765 GAAGTAGGAATAATAATACTAGAAATAATATTATTTGCATAAAGTAGAGATCTAAAAACA 44824 Query 84807 GGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA 84862 || ||| ||||| | ||||| | |||||| ||| | ||| ||||| || || Sbjct 44825 GGTTCAAAAATACCATTAATATTTATTGGGGGAGCAGTGATGAAAGCAATAATAAA 44880 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 || || ||||| ||||| |||| || ||||| | ||| |||||| | | | | || | Sbjct 44175 CTATGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCTAAAATAGTA 44234 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 ||| |||| | ||| ||||||||| | | |||||| || | |||| || |||||| Sbjct 44235 AACTAAATATCTACCGTAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTG 44294 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || | || || ||| | | || || || || || |||||||| |||||||||||| Sbjct 44295 AAATA----TATTGAAAGTTCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAA 44350 Query 84270 GTTT 84273 |||| Sbjct 44351 GTTT 44354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571259182482520