Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17 206 3e-48 seq12 100 3e-16 >seq17 Length=27373735 Score = 206 bits (228), Expect = 3e-48 Identities = 403/588 (69%), Gaps = 13/588 (2%) Strand=Plus/Plus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| || ||||| || || | || || |||| | ||||| || || |||||||| Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAA 19075 ||| |||||||| ||||| | || |||| ||| ||||| | ||| || |||||| | Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCAGAGA 24448092 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 | ||||| || || || |||||||| | || || || | | || || | Sbjct 24448093 AAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAA---AGTCTCCGAAC 24448149 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 || |||||| | || ||||| |||||||| || ||||| || | || || || | Sbjct 24448150 CATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGG 24448209 Query 19196 AATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 || ||| | ||| | | ||||| | ||||| | ||| | || | ||| | || Sbjct 24448210 CATGAAACAAACGATTCTT---CTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAC 24448266 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 ||||||| || || |||||||| || ||||| || || ||||| |||||| | || | Sbjct 24448267 TGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCT 24448326 Query 19313 CTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 | | || ||| ||||| || || ||| | | | | ||||||| |||||| |||||| Sbjct 24448327 CAGCTACCTGAACTTC-CTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCA 24448385 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || ||||| || || | ||||| | ||||| || || ||||| || |||| || Sbjct 24448386 GAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTT 24448445 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | ||||| | ||||| ||| | ||| || || || | |||||||| || ||||| Sbjct 24448446 TCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCG 24448505 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 ||||| || ||||| | |||||| | ||||||| || || || ||| Sbjct 24448506 GCTTTCTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATA 24448553 >seq12 Length=31596830 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || | |||||| || | ||| ||| Sbjct 29957322 CCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCCA 29957381 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| || || ||| |||| | ||||| || || Sbjct 29957382 TTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGAG 29957441 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || || |||||||| || Sbjct 29957442 ACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATG 29957501 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 29957502 CCTTCAATACTATCATCTTTCAT 29957524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094613779160