Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1998 170 6e-38 seq560 80.6 8e-11 >seq1998 Length=1172 Score = 170 bits (188), Expect = 6e-38 Identities = 285/404 (71%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | || ||||| || || | Sbjct 375 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || || | || ||||||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | ||||||||||| | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 26040 TCTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | |||||||| |||| | | || || ||| ||||||||||||| || ||| | || ||| Sbjct 197 TATGGGAAGC-GGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 139 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 138 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 79 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACC 26202 | || || ||| | || ||||| |||||||||| |||| || Sbjct 78 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 35 >seq560 Length=20368 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284 ||||| | ||||| | || || || || ||| |||||| |||||||| || |||||| Sbjct 20277 TTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 20336 Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGC 26316 |||||||| ||||||||| | |||||||| || Sbjct 20337 GGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146722882142856