Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1998 219 1e-52 seq287 98.7 3e-16 seq151 91.5 4e-14 seq560 89.7 2e-13 >seq1998 Length=1172 Score = 219 bits (242), Expect = 1e-52 Identities = 300/418 (72%), Gaps = 1/418 (0%) Strand=Plus/Plus Query 5760 AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATC 5819 ||||| | || ||||| || ||||||||||| || |||||| || ||||| || | | Sbjct 19 AGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGAC 77 Query 5820 TGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGA 5879 | ||||||||||||| | || |||| |||| || | ||||| | |||||| | | Sbjct 78 GGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAA 137 Query 5880 CGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGA 5939 | | || | || || || |||||||| | ||||||||| | | || |||||||| | Sbjct 138 CAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCCGCTTCCCATA 197 Query 5940 TGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGT 5999 | || || || || || || || || || | || | || ||| || || || || | Sbjct 198 TTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATAT 257 Query 6000 TGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGG 6059 |||||||||| ||||||||||| | || |||||||| || || || || || || || | Sbjct 258 TGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAG 317 Query 6060 GTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTA 6119 | ||||| | ||| || | |||||| ||| ||||||||| || | | || ||||| | Sbjct 318 GGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCA 377 Query 6120 AGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||||||||| || | || || ||||| | ||||| || | ||||| |||||| Sbjct 378 AAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 435 >seq287 Length=58314 Score = 98.7 bits (108), Expect = 3e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 5630 ATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAA 5689 ||||| || || ||||||||||| ||||| || |||| |||||| | |||||||| ||| Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493 Query 5690 GTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATA-C 5748 || | || | || || ||||| | || | || ||||||| || | || || | | Sbjct 44494 ATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAGATC 44553 Query 5749 TAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCG 5808 | ||| | | || || | ||||| | ||||||||||| || ||||||| || | Sbjct 44554 AAGAAAACCATAATA-GCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGGACA 44612 Query 5809 CATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 ||| | || || || |||||||||| | || |||| |||| Sbjct 44613 CATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAA 44655 Score = 82.4 bits (90), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 5630 ATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAA 5689 ||||| || || || |||||||| ||||| || | || |||||| | | ||||||| ||| Sbjct 17886 ATGTGAAATGGGTGTATAAGGATGTTGTGCTCAGTCTAGAATACAATCCTAAAGTTGAAA 17945 Query 5690 GTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACT 5749 || || || | || |||||||||| || | |||| ||||| || | || || | Sbjct 17946 ATATCAAAGCTTCCTAGAGGCATACTATAAGAAAAACATCCCTAGCCAATTGGATAGATC 18005 Query 5750 AAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCG 5808 || || || | ||| | ||||| | ||||||||||| || ||||||| || | Sbjct 18006 AAGAAAACAATAATAGTA-GTTGCAACACGAGCTGAATATGCAACAAAAATCCAAGGACA 18064 Query 5809 CATTCCTAATCTGTAACTAAGTTCCCA 5835 ||| | | || || |||||| ||| Sbjct 18065 CATACTCAGTCAAAAATTAAGTTGCCA 18091 >seq151 Length=113734 Score = 91.5 bits (100), Expect = 4e-14 Identities = 359/559 (64%), Gaps = 22/559 (4%) Strand=Plus/Plus Query 5630 ATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAA 5689 ||||| || || || | |||||| ||||| | | || |||||| | ||||||||| ||| Sbjct 4638 ATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAGAATACAATCATAAAGTTGAAA 4697 Query 5690 GTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACT 5749 ||||| | | || |||||||||| || | |||||||||| || | || || | Sbjct 4698 ATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTTCCCTAACCAATTGGATAGATC 4757 Query 5750 AAAAATACTGAGTAG--GCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTC 5807 || || || | || || | ||||| | ||||||||||| || ||||||| || | Sbjct 4758 AAGAAAAC--AATAATTGCAGTTGCAACACGAGCTGAATATGCAACAAAAATCCAAGGAC 4815 Query 5808 GCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAA 5867 ||| | || || |||||| ||| | || | |||| || | || || | Sbjct 4816 ACATACTCGGTCAAAAATTAAGTTGCCACTCATCACCTATGTAACAAGCTACACTAAGTA 4875 Query 5868 GGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGG 5927 |||| || | |||| || || ||||||| ||||||||||| | | | Sbjct 4876 AAAAGTATTGAACAATTAGTTCTTAAGGATAGTCATTGTATAGCCATTCATCAACAGAG- 4934 Query 5928 CTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC-GTTGGAGC-----TGGGTACAA 5981 |||||| | || || || | || || || | | ||| | | | || Sbjct 4935 -------CCAGATTGAGTAAAAATGCCAACCTATAGCTGCAGAAGCAGAAGTAAGAATAA 4987 Query 5982 CGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGC 6041 | || || || || ||| |||| |||||||||| || |||||||| || | Sbjct 4988 TAATACTAGAAATAATATTATTTGCATAAAGTAGAGATCTAAAAACAGGTTCACGAATAC 5047 Query 6042 CGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGT--TGCGGT 6099 | | |||| | ||||| ||| | |||||| | |||||| || ||| || ||| Sbjct 5048 CATTAATGTTTATCGGGGGAGCATTAATGAATGCAATAATAAATATAGAAGTTGTGTGGT 5107 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAG-AGGCGGTTGTTGGTGC 6158 || | | || ||||| || | ||||||||| | | ||| |||||||| || ||| Sbjct 5108 CAATAAAGTAGGGATCATCAAAATACCAAACCATACAATGTAGAAGGCGGTT-TTAGTGT 5166 Query 6159 TAGTAACCCAGTCACAGAA 6177 | || | ||| | |||||| Sbjct 5167 TGGTTATCCAATTACAGAA 5185 >seq560 Length=20368 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 5723 AAACTTCCCTGTCC 5736 || |||||||| || Sbjct 20308 AAGCTTCCCTGACC 20295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645940130434