Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1998 210 7e-50 seq287 111 5e-20 seq560 96.9 1e-15 >seq1998 Length=1172 Score = 210 bits (232), Expect = 7e-50 Identities = 308/436 (71%), Gaps = 0/436 (0%) Strand=Plus/Plus Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 26061 |||| ||||| |||||| || ||||||||||| |||||||| || ||| ||||| Sbjct 2 TAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 61 Query 26062 GGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCG 26121 || | ||| || || | ||||||||||||| | || |||| |||| | | || Sbjct 62 GGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 121 Query 26122 ATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | | ||||| | ||||| || | ||| || || || || || ||||| || || | Sbjct 122 AGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACA 181 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT 26241 | ||| |||||||| |||||||| || || | ||| || || ||| | || | || Sbjct 182 GATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATG 241 Query 26242 GCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 26301 || || || || || ||||||||||| |||| | ||| || ||||| |||||||||||| Sbjct 242 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 301 Query 26302 TCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAA 26361 || ||||| || ||||| ||||||| || || || | |||| | | ||| || || Sbjct 302 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 361 Query 26362 AGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTA 26421 | | ||||||||| | || |||||||| || | || || ||||| | || || || Sbjct 362 AAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTT 421 Query 26422 ACCCAGTCACATAAAC 26437 | ||||| ||| |||| Sbjct 422 ATCCAGTTACAGAAAC 437 >seq287 Length=58314 Score = 111 bits (122), Expect = 5e-20 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 25888 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 25947 || || || || ||||||||||| ||||| || |||| || |||| ||||| |||||| Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493 Query 25948 GTCCCTGAAA--TACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 26005 | | ||| | || || ||||| | || ||| || || || | |||| || |||| Sbjct 44494 AT--ATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAGA 44551 Query 26006 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 26065 ||||| || || || | ||||||| | |||||||| || ||| | ||||| || | Sbjct 44552 TCAAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGGAC 44611 Query 26066 TCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| | ||||| | || |||||||||| | || |||| |||| Sbjct 44612 ACATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAA 44655 >seq560 Length=20368 Score = 96.9 bits (106), Expect = 1e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 || || || || |||| || |||| ||||| | |||| || ||||||||||| Sbjct 20308 AAGCTTCCCTGACCAATTGGATAGATCAAGAAAAGAGCAGTAGCAGCTGCAACAGG 20253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989955858444