Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq17 154 2e-32 >seq17 Length=27373735 Score = 154 bits (170), Expect = 2e-32 Identities = 355/529 (67%), Gaps = 13/529 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || ||||| || || || |||||||||| | ||||| || || ||||| ||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| ||||| | || | || || | |||||||||||| ||| ||| | ||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAA 24448093 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT-AAT 37350 || || || || || ||||| || | || | | ||||||| || || Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGT----CTCCGAAC 24448149 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTCAA 37407 || |||||| | | ||| || |||||| ||| ||||| || || || | Sbjct 24448150 CATCAATCCACCTGAGAGCCCACTCAGCCTTT---TTAGCCACACAAGGAACGGTATCGA 24448206 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | || | || | | || || || | ||| | |||||||| || | | | || Sbjct 24448207 TGGCATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAC 24448266 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 | ||||| |||||||||||||| |||||||| || || || ||||||||| | ||| | Sbjct 24448267 TGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCT 24448326 Query 37528 CAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCAC 37587 ||| || ||||| || || | ||| | ||| | |||||| |||||| |||||| Sbjct 24448327 CAGCTACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAG 24448386 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTT 37647 || |||||||| |||||||||| | ||||| || | ||||| | || ||| Sbjct 24448387 AGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTT 24448446 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||||| | ||||| || | ||| || || || | |||||||| Sbjct 24448447 CCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAA 24448495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592301851404760