Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 seq11 107 1e-18 seq10 100 2e-16 seq17 98.7 8e-16 seq1 91.5 1e-13 seq18 84.2 2e-11 seq7 82.4 6e-11 seq4 82.4 6e-11 >seq13 Length=28119335 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| ||| || ||| ||| || || || |||||||||| Sbjct 2662436 CGCCGCCTCGGAGACGAAGCACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAG 2662377 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| | || |||| |||| |||||| ||||| || ||||| ||||| ||||| | | Sbjct 2662376 CGAGAGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAG 2662317 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | || || || | ||| | Sbjct 2662316 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAAGACTCAA 2662257 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||| | || ||||| || ||||| | ||||| || || |||||||| || Sbjct 2662256 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGGT 2662205 >seq11 Length=27369018 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| |||||||||||||| |||| || | || Sbjct 5723213 AGGCGGAGCACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGG 5723154 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| ||||| | ||| || || | |||| || || Sbjct 5723153 CCATCCTCTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCT 5723094 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| |||||| | | | ||||| |||||||||| || Sbjct 5723093 TTGTCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCACCTCCAAAGTG 5723034 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | |||||||||||| ||||||||| Sbjct 5723033 ATTGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCATC 5722995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || ||||| ||||| || | || | || Sbjct 5723897 AGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGG 5723838 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| ||||| |||| | ||| || || | || | ||||||| Sbjct 5723837 CCATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCC 5723778 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || || || ||||||| ||| Sbjct 5723777 TTGTCTTGGATCTTTGCCTTGACATTGTCAATAGTATCAGAACTTTCAACCTCCAGGGTA 5723718 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | || || ||||| |||||||| Sbjct 5723717 ATTGTTTTACCCGTTAGGGTCTTCACAAATATCTGCAT 5723680 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || |||||||| || | || | || Sbjct 5723441 AGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGCAAGTGTACGG 5723382 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 | || |||| ||||||||||||||| |||| | ||| || || |||||| | ||||| Sbjct 5723381 CCATCCTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATC-CCCTC 5723323 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || |||||| || ||| | | | || || || ||||| |||| || Sbjct 5723322 CTTATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGAGCTTTCCACTTCCAAAGT 5723263 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || || | ||||| ||||| || ||||| Sbjct 5723262 AATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 5723224 >seq10 Length=26335333 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || ||||||||||||| || | || | || ||||| ||| Sbjct 23446832 TGAAGAGTGGACTCCTTCTGGATATTGTAATCAGCAAGCGTACGCCCATCTTCCAATTGC 23446891 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||| | ||||||||| | |||| ||||| ||||| || ||| Sbjct 23446892 TTCCCTGCAAAGATCAGCCTCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTT 23446951 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||| ||||||| || ||||| || || ||| Sbjct 23446952 GCCTTGACATTATCAATTGTATCAGAGCTCTCAACCTCCAAAGTGATCGTCTTCCCAGTC 23447011 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||||||||| Sbjct 23447012 AATGTCTTCACAAAAATCTGCAT 23447034 >seq17 Length=27373735 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| |||||||||| | | | || | || |||| |||||| ||||| || Sbjct 16112290 TCCTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTCCCGGCGAAG 16112231 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| | ||| ||||| | || | || |||||||| ||| ||| || ||| | Sbjct 16112230 ATCAGCCTCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGAATTTTTGCCTTAACATTA 16112171 Query 48696 CCCACAGACTCTGACGC-CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || | || ||||||||||| ||||| |||||||| ||||| || || || Sbjct 16112170 TCAATGGTGTC-GCTGCTCTCCACCTCCAGGGTAATAGTTTTTCCAGTCAAGGTCTTCAC 16112112 Query 48755 AAAAATCTGCATC 48767 |||||||||||| Sbjct 16112111 GAAAATCTGCATC 16112099 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || || ||||||| ||| | | | || |||| |||||| || ||||| Sbjct 16112519 CTCTTTCTGGATGTTATAATCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAA 16112460 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| ||||| | ||||| |||||||| || |||||| || ||| Sbjct 16112459 GATAAGCCTCTGCTGATCTGGGGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATT 16112400 Query 48695 ACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 | | || | || ||| ||||||||||| || || || || || ||||| || | Sbjct 16112399 ATC----GATTGTGTCGCTGCTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCT 16112344 Query 48751 TTACAAAAATCTGCAT 48766 | ||||| |||||||| Sbjct 16112343 TGACAAAGATCTGCAT 16112328 >seq1 Length=34959721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| | |||||||||| ||| || || ||| || ||||| ||||| || | Sbjct 31554284 CCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCA 31554343 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | || || || || || || || ||||| || |||| ||| Sbjct 31554344 AGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGA 31554403 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | || || || | ||| ||| Sbjct 31554404 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATAGTGTCCGAAGACTCTACC 31554463 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || ||||| | ||||| || || ||||||||| Sbjct 31554464 TCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 31554511 >seq18 Length=25231592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 9087 AATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAA 9146 ||||| || ||||||| || ||| || || |||| || | || |||||||| || Sbjct 2570660 AATTAGCTGGGCAATCCGATCTCCCACTTTAACATCAAAATCCATATCCGAATGATTAAA 2570719 Query 9147 CAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGAT 9206 || | || || || |||||||||||| |||| |||||||| ||||||||||| || Sbjct 2570720 CAATATAACCCCAACTGGACCCCTGTAATCAGCATCTATCACACCTGCACCCACGTCAAT 2570779 Query 9207 GAAGTGCTT 9215 | ||||||| Sbjct 2570780 GGAGTGCTT 2570788 >seq7 Length=27069033 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || |||| ||| || || ||| ||||| || || ||||||| || | | Sbjct 1828856 AGCCTCAGAACCAGATGAAGGGTTGACTCCTTTTGGATGTTATAATCAGCGAGGGTCCTT 1828915 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| |||| ||| |||||||| | || | || ||| Sbjct 1828916 CCATCCTCCAGCTGCTTCCCAGCAAAGATCAATCGTTGTTGATCTGGTGGGATACCTTCC 1828975 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| || | | | | || || || || |||| || Sbjct 1828976 TTATCTTGAATCTTGGCTTTGACGTTATCGATTGTATCCGAGCTTTCGACTTCCAGGGTT 1829035 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | ||||||||||| |||||||| Sbjct 1829036 ATCGTCTTTCCGGTGAGGGTTTTTACAAAGATCTGCAT 1829073 >seq4 Length=28735499 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| || |||||||| || | || | || Sbjct 24493438 AGGCGGAGCACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGCAAGTGTGCGG 24493497 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| |||| | ||| ||||| | || | || ||| Sbjct 24493498 CCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATCCCTTCC 24493557 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | | || || ||| ||||||| ||| Sbjct 24493558 TTGTCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCCGAACTCTCTACCTCCAAAGTA 24493617 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || |||||||||||||| Sbjct 24493618 ATGGTCTTCCCTGTAAGAGTCTTCACAAAAATCTGCAT 24493655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928226435137