Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1998 197 2e-45 seq151 98.7 1e-15 seq287 86.0 7e-12 >seq1998 Length=1172 Score = 197 bits (218), Expect = 2e-45 Identities = 303/432 (70%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 432 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 373 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| || | | ||| | || || || || || |||||||| || ||||| Sbjct 372 ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCG 313 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || ||||| ||||| || Sbjct 312 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 253 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| ||| ||||| ||| | || || || || || ||| Sbjct 252 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 193 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| || ||||||| ||||| || ||||| || |||| | || | || | Sbjct 192 GAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 133 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 132 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 73 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| ||||||||| || || || || | || || ||||| Sbjct 72 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 13 Query 162922 TTCTTGGTCTAT 162933 |||||| ||||| Sbjct 12 TTCTTGATCTAT 1 >seq151 Length=113734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 329/502 (66%), Gaps = 15/502 (3%) Strand=Plus/Minus Query 162863 GTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGT 162922 ||||| |||||||||| | ||||||||| || || | || | | ||| | ||| | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 162923 TCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTG 162982 ||||| ||||||| | ||| | || ||| ||| | |||||||| || | || || Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 162983 GTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCC 163042 ||| ||| |||| ||| | || ||| | | ||||||||||||| | ||||| || | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 163043 ATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTC 163102 | || ||| || || | | | ||| | || | ||||||||| |||| | Sbjct 4641 ACAT-ATT--AGGCGTAATTACA---ACAACTTC-TTATTCAATGCTATGCATCGTTC-C 4590 Query 163103 TTG-TTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 ||| | || ||| | | || | ||||| || | | | || || | |||| Sbjct 4589 TTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTAC 4530 Query 163162 AAGTTCGGACAAGAAG--AAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTC 163219 | ||| | || || || | ||||| || || | ||||||||||| || ||||| | Sbjct 4529 AGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCC 4470 Query 163220 GCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTG 163279 | |||| |||||| ||| | |||||||||||| | ||| | || || ||||| | || Sbjct 4469 GATTGAACTTCCA--ATG--TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTG 4414 Query 163280 CATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACC 163339 | | ||| | || | || | ||| ||| | | | | | |||| | || |||| Sbjct 4413 CTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTCTTTTAACC 4354 Query 163340 TTAACGGTTTCAACTTCAACCA 163361 | || | ||| || |||||||| Sbjct 4353 TAAATGATTTTAATTTCAACCA 4332 >seq287 Length=58314 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || || || ||||| |||||||||| | ||||||||| Sbjct 44648 GGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCATAT 44589 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || | || | | || | || |||||| ||||||| | ||| | || Sbjct 44588 TCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGAAGC 44529 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||| | ||||| || || | | | || ||| |||| || | || ||| | Sbjct 44528 TTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTCTAG 44469 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATAT 163046 || |||||||||||||| |||||||| || || || Sbjct 44468 GCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553070841522360