Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1998 187 3e-42 seq14 147 2e-30 seq10 102 9e-17 seq287 93.3 5e-14 seq11 86.0 7e-12 >seq1998 Length=1172 Score = 187 bits (206), Expect = 3e-42 Identities = 305/437 (70%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 436 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 377 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 |||||| || ||| | ||| | |||||| ||||| || || |||| ||| | ||||| | Sbjct 376 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | || || || ||||| || || ||||| || || |||| || || | ||||| |||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | |||||| | | || | | || ||||| ||||| ||||||||| | | Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | | ||||||||||| ||||| ||| ||||| || || ||||||||||| || | | Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 163310 CAGTCTTCCTGGTCTAT 163326 | || ||| || ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 147 bits (162), Expect = 2e-30 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| |||||||| || |||||||| | || || ||||| || |||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 165404 ||||| | || | ||| | ||||| || ||||| ||||| || || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 165405 ACATCCTCTATTGGCATTATT-GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAG 165463 | | || | || |||| | ||||| |||| || | ||||| || || ||||| Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 165464 TCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 165523 |||| | ||| | |||||||||||||| ||||||||||| ||||||| ||||| || || Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 Query 165524 ATT 165526 || Sbjct 951957 CTT 951955 >seq10 Length=26335333 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 || ||||| |||||| |||||||| || ||||| | ||||| || | || ||| Sbjct 23499978 TATATTCTTGACGCATTTGAAGAAGCTGGTATTGATCTGCCATACTCATGCAGGGCAGGT 23500037 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 ||||||| || |||||||| ||||||||| |||||| | || ||| |||| | Sbjct 23500038 TCTTGCTCTTCCTGTGCAGGGAAAATTGTAGGAGGAACTCTAGACCAGTCTGATGGGAGC 23500097 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 ||||| || ||||| ||||| | ||| || | || || || ||||| || || || Sbjct 23500098 TTCCTTGAAGATGACCAGATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCTTACCCTCAG 23500157 Query 164243 TCTGATTGTGT 164253 ||||||||||| Sbjct 23500158 TCTGATTGTGT 23500168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 ||||| || |||||||||||| | |||||||| || | ||||| || | ||||| Sbjct 7997424 TACATCCTCGACGCAGCAGAAAATGCAGGAGTAGAGCTGCCATACTCATGCAGAGCTGGG 7997365 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 || ||||| | ||||| || | | || ||||| |||| || || ||| |||| Sbjct 7997364 GCCTGCTCTACTTGTGCCGGGCAGCTGGTTACTGGATCTGTGGACCAATCAGATGGGTCA 7997305 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 || || |||| || || || | | || | |||||||| || || | |||||||| Sbjct 7997304 TTTCTCAACGAGGAGCAAATGGAAAAGGGTTATGTGCTTACCTGCGTCTCTTATCCAACT 7997245 Query 164243 TCTGATTGTGTT 164254 || ||||||||| Sbjct 7997244 TCAGATTGTGTT 7997233 >seq287 Length=58314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278 || ||||| ||||| ||||||||| | ||| || ||||| | || ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338 ||||| || || | ||||||| | || || ||| || ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398 || || ||| | ||||| || || | || | | ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGT 163457 ||| | || |||||||||||||| |||||||| || || || || || || |||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 >seq11 Length=27369018 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 ||||| ||||| || || || | ||||||||||| | |||||||| | ||||| Sbjct 27029556 TACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGCAGGGCTGGA 27029615 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 |||||||| | ||||| || || || || || || | |||||||| |||| || Sbjct 27029616 GCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCTGATGGTTCC 27029675 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 ||||| || || |||| || | | || | |||| || ||||| | || ||||| Sbjct 27029676 TTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCTTACCCAACT 27029735 Query 164243 TCTGATTGTGTT 164254 || ||||||||| Sbjct 27029736 TCAGATTGTGTT 27029747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563195385997720