Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq17 111 3e-19 >seq17 Length=27373735 Score = 111 bits (122), Expect = 3e-19 Identities = 373/576 (65%), Gaps = 11/576 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| || || || || | |||||||||||| || || ||| | | |||| || Sbjct 24447969 TATAGCAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAA 24448028 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | |||||||||| |||| || || ||||| || ||||| ||| ||| Sbjct 24448029 AATGTTAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCA 24448088 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||| || || |||||||| || || ||| | |||||||| |||||| | Sbjct 24448089 GAGAAAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGAA 24448148 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 || ||||| || ||||| || ||||| || | || || | || || Sbjct 24448149 CCATCA---ATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCG 24448205 Query 48362 ATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418 ||||| | || | | ||||| |||| | ||| | ||| || | || Sbjct 24448206 ATGGCATGAAACAAACGATTCTT---CTCATTGGAGTCTTTGATATAAGTCTCCAACAAA 24448262 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 ||||||||||||||| | |||||| |||||||| ||||| || || || || | Sbjct 24448263 AGACTGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGA 24448322 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537 |||||| ||||| ||||| | | || ||||| ||||| ||| ||||| || Sbjct 24448323 GCCTCAGCTACCTGAACTTC-CTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACC 24448381 Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 ||| || ||||||||||||||||| ||||| | | || || ||| | | || || Sbjct 24448382 ATCAGAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAG 24448441 Query 48598 AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | | ||| | | |||| || || || || || ||||||| ||||| || Sbjct 24448442 GGTTTCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGC 24448501 Query 48658 GAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| |||||||| ||||||| | ||||| Sbjct 24448502 CTCGGCTTTCTTGTACATCTCCCATATTTGTGGATA 24448537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509290440960